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PI0022060 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022060
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr08:9041509..9041937
RNA-Seq ExpressionPI0022060
SyntenyPI0022060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.4e-2855.63Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+ +  +  IP SS N       +PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH+ S T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ RD AL+TLINA LS SA+ HVVGS + + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.4e-2857.75Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+    +  IP SS N PSV    PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH+ S T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ RD AL+TLIN  LS SA+AHVV S S + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-2856.34Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+ +  +  I  SS NS      +PTST+FLLSN CNL             KYQV SILKAHS FGH +D+LPCPPKH+SS T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ R  AL+TLINA LS SA+AHVVGS S + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.4e-2855.63Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+ +  +  IP SS N       +PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH+ S T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ RD AL+TLINA LS SA+ HVVGS + + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

TYK11141.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.8e-2957.55Show/hide
Query:  SAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLNYLQ
        S Q       +LT+ I S ++PSV    PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH  S T    SEIN  Y+Q
Subjt:  SAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLNYLQ

Query:  WVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        W+ RD AL+TLINA LS SA+AHVVGS S + LWLSLEK
Subjt:  WVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein6.7e-2955.63Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+ +  +  IP SS N       +PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH+ S T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ RD AL+TLINA LS SA+ HVVGS + + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

A0A5A7UZE5 Putative mitochondrial protein6.7e-2957.75Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+    +  IP SS N PSV    PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH+ S T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ RD AL+TLIN  LS SA+AHVV S S + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

A0A5A7VGG0 Retrotransposon protein6.7e-2956.34Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+ +  +  I  SS NS      +PTST+FLLSN CNL             KYQV SILKAHS FGH +D+LPCPPKH+SS T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ R  AL+TLINA LS SA+AHVVGS S + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

A0A5D3BEU0 Putative mitochondrial protein6.7e-2955.63Show/hide
Query:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN
        MAT +  S+ +  +  IP SS N       +PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH+ S T    SEIN  
Subjt:  MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLN

Query:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        YLQW+ RD AL+TLINA LS SA+ HVVGS + + LWLSLEK
Subjt:  YLQWVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

A0A5D3CH60 Putative mitochondrial protein2.3e-2957.55Show/hide
Query:  SAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLNYLQ
        S Q       +LT+ I S ++PSV    PTST+FLLSN CNL             KYQV SILKAHSLFGH +D+LPCPPKH  S T    SEIN  Y+Q
Subjt:  SAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNL-------------KYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLNYLQ

Query:  WVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK
        W+ RD AL+TLINA LS SA+AHVVGS S + LWLSLEK
Subjt:  WVLRDHALLTLINAALSPSAIAHVVGSTSFEDLWLSLEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCTCTGCCCAAAGCTCAGAAACCACCCCTAACACCCTTACCATCCCTATTTCCTCCAAAAATTCACCCTCAGTCACAAACACTATTCCCACCTCCACCATTTT
CTTGTTGTCCAATACCTGCAACCTTAAGTATCAAGTTTTCTCGATTCTCAAAGCCCATTCTCTATTCGGTCATTTCAATGATTCCCTTCCCTGTCCTCCAAAACATATTT
CCTCTCCCACTGCTCCTGCCACTTCTGAAATCAATCTTAACTACCTTCAATGGGTGTTGCGTGATCATGCACTACTTACCTTAATCAATGCTGCCTTATCCCCCTCTGCC
ATTGCCCATGTTGTTGGCTCTACCTCCTTCGAAGATCTCTGGCTCTCTTTAGAAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCTCTGCCCAAAGCTCAGAAACCACCCCTAACACCCTTACCATCCCTATTTCCTCCAAAAATTCACCCTCAGTCACAAACACTATTCCCACCTCCACCATTTT
CTTGTTGTCCAATACCTGCAACCTTAAGTATCAAGTTTTCTCGATTCTCAAAGCCCATTCTCTATTCGGTCATTTCAATGATTCCCTTCCCTGTCCTCCAAAACATATTT
CCTCTCCCACTGCTCCTGCCACTTCTGAAATCAATCTTAACTACCTTCAATGGGTGTTGCGTGATCATGCACTACTTACCTTAATCAATGCTGCCTTATCCCCCTCTGCC
ATTGCCCATGTTGTTGGCTCTACCTCCTTCGAAGATCTCTGGCTCTCTTTAGAAAAGTGA
Protein sequenceShow/hide protein sequence
MATSAQSSETTPNTLTIPISSKNSPSVTNTIPTSTIFLLSNTCNLKYQVFSILKAHSLFGHFNDSLPCPPKHISSPTAPATSEINLNYLQWVLRDHALLTLINAALSPSA
IAHVVGSTSFEDLWLSLEK