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PI0022094 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022094
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr05:6041987..6042529
RNA-Seq ExpressionPI0022094
SyntenyPI0022094
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035461.1 gag-pol polyprotein [Cucumis melo var. makuwa]8.2e-1133.08Show/hide
Query:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA
        + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   +       E+ E  +N     +   E ++ D L+   +  
Subjt:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA

Query:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        KW+++  ++  Q++ IQCL   N   LS+I  L
Subjt:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

KAA0051793.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.0e-1742.36Show/hide
Query:  RENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF--SKSVVVKIEDFESQKNDGKDVVFLVEPL
        +E +KS + S  K DRSFKC ECE F HYQAEC +F+K K KSL +TLS++ES+ +SD E  G  L+ C   ++S V K E   + K+   +        
Subjt:  RENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF--SKSVVVKIEDFESQKNDGKDVVFLVEPL

Query:  ASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        +S L  D + +KW+++  V K QK++IQ L  +NH L+S I  L
Subjt:  ASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

KAA0053130.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.0e-1437.75Show/hide
Query:  RENEKSMNHS-YPKVD---RSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKN-----DGKDV
        RENEK    S + K D   RS +C E + F HYQAEC +F+K K+K L +TLS+DE+T +S+ E+ G+ L     ++   K      QK      D +  
Subjt:  RENEKSMNHS-YPKVD---RSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKN-----DGKDV

Query:  VFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
           +  +  DL+      KW+   +VLK+QK++IQ L   NH L+S I+IL
Subjt:  VFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

KAA0059883.1 uncharacterized protein E6C27_scaffold108G001750 [Cucumis melo var. makuwa]3.7e-1136.15Show/hide
Query:  KVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQ
        K+DRS KCRECE +GHYQ EC +F + +KKS ++TLS  ++  + +  E  +  +   SK    ++ED E +  D               S   +  KW+
Subjt:  KVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQ

Query:  DNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        ++  V   QK+KI  L   N RLLS IS L
Subjt:  DNLVVLKEQKDKIQCLSTNNHRLLSTISIL

XP_016902771.1 PREDICTED: uncharacterized protein LOC107991877 [Cucumis melo]8.2e-1133.08Show/hide
Query:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA
        + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   +       E+ E  +N     +   E ++ D L+   +  
Subjt:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA

Query:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        KW+++  ++  Q++ IQCL   N   LS+I  L
Subjt:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

TrEMBL top hitse value%identityAlignment
A0A1S4E3G5 uncharacterized protein LOC1079918774.0e-1133.08Show/hide
Query:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA
        + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   +       E+ E  +N     +   E ++ D L+   +  
Subjt:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA

Query:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        KW+++  ++  Q++ IQCL   N   LS+I  L
Subjt:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

A0A5A7T1K8 Gag-pol polyprotein4.0e-1133.08Show/hide
Query:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA
        + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   +       E+ E  +N     +   E ++ D L+   +  
Subjt:  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYA

Query:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        KW+++  ++  Q++ IQCL   N   LS+I  L
Subjt:  KWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

A0A5A7UD40 Gag-pol polyprotein2.9e-1437.75Show/hide
Query:  RENEKSMNHS-YPKVD---RSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKN-----DGKDV
        RENEK    S + K D   RS +C E + F HYQAEC +F+K K+K L +TLS+DE+T +S+ E+ G+ L     ++   K      QK      D +  
Subjt:  RENEKSMNHS-YPKVD---RSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKN-----DGKDV

Query:  VFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
           +  +  DL+      KW+   +VLK+QK++IQ L   NH L+S I+IL
Subjt:  VFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

A0A5D3DD57 Gag-pol polyprotein9.7e-1842.36Show/hide
Query:  RENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF--SKSVVVKIEDFESQKNDGKDVVFLVEPL
        +E +KS + S  K DRSFKC ECE F HYQAEC +F+K K KSL +TLS++ES+ +SD E  G  L+ C   ++S V K E   + K+   +        
Subjt:  RENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF--SKSVVVKIEDFESQKNDGKDVVFLVEPL

Query:  ASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        +S L  D + +KW+++  V K QK++IQ L  +NH L+S I  L
Subjt:  ASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISIL

A0A5D3DMG4 Uncharacterized protein1.8e-1136.15Show/hide
Query:  KVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQ
        K+DRS KCRECE +GHYQ EC +F + +KKS ++TLS  ++  + +  E  +  +   SK    ++ED E +  D               S   +  KW+
Subjt:  KVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQ

Query:  DNLVVLKEQKDKIQCLSTNNHRLLSTISIL
        ++  V   QK+KI  L   N RLLS IS L
Subjt:  DNLVVLKEQKDKIQCLSTNNHRLLSTISIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCGATCAAGGAAGTGGGTGAGTCAAATGTTGATGCTCTCCCCACTATACAACATGTTGCAAGCTTAAGCGTTAGAGAGAATGAGAAAAGTATGAACCATAGCTA
TCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGATTTTGGACATTATCAAGCTGAGTGTCAAAGCTTTATGAAGGGAAAAAAGAAAAGTCTGACTATAACTC
TTTCTGAGGATGAATCAACTATGAATAGTGATTGTGAAGAAAATGGCCAGCCATTGCTTGGGTGTTTCTCTAAAAGTGTTGTCGTGAAGATCGAGGATTTCGAGTCACAG
AAGAATGATGGGAAAGATGTTGTTTTCCTCGTTGAACCTTTAGCTAGTGACTTGAGTGCTGACTATGTGTATGCAAAGTGGCAAGATAACCTAGTGGTGTTGAAAGAACA
AAAGGACAAGATACAGTGCCTATCAACAAATAATCATCGCTTATTATCCACGATATCTATCTTAATTAAAGCAAGAGCTGAGGGCTGTTCAGATGGATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCGATCAAGGAAGTGGGTGAGTCAAATGTTGATGCTCTCCCCACTATACAACATGTTGCAAGCTTAAGCGTTAGAGAGAATGAGAAAAGTATGAACCATAGCTA
TCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGATTTTGGACATTATCAAGCTGAGTGTCAAAGCTTTATGAAGGGAAAAAAGAAAAGTCTGACTATAACTC
TTTCTGAGGATGAATCAACTATGAATAGTGATTGTGAAGAAAATGGCCAGCCATTGCTTGGGTGTTTCTCTAAAAGTGTTGTCGTGAAGATCGAGGATTTCGAGTCACAG
AAGAATGATGGGAAAGATGTTGTTTTCCTCGTTGAACCTTTAGCTAGTGACTTGAGTGCTGACTATGTGTATGCAAAGTGGCAAGATAACCTAGTGGTGTTGAAAGAACA
AAAGGACAAGATACAGTGCCTATCAACAAATAATCATCGCTTATTATCCACGATATCTATCTTAATTAAAGCAAGAGCTGAGGGCTGTTCAGATGGATTTTAG
Protein sequenceShow/hide protein sequence
MESIKEVGESNVDALPTIQHVASLSVRENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQ
KNDGKDVVFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISILIKARAEGCSDGF