; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0022118 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022118
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr03:9307207..9307869
RNA-Seq ExpressionPI0022118
SyntenyPI0022118
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032911.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-1437.07Show/hide
Query:  SSIAGKSSKLPPNVFNLQSHSSLSHPTSSFE---LFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSAS-PSE---PVTSKPISTSTSSLFR
        + ++ + SK  P   +  +H+ L     +     LFD D D  D+V  A LL+ +   +   N  P  S + P S S PSE      S P   S     R
Subjt:  SSIAGKSSKLPPNVFNLQSHSSLSHPTSSFE---LFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSAS-PSE---PVTSKPISTSTSSLFR

Query:  DEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRI-ITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQW
         +  +     L+   P + +  +P A+ +  +    +P   P+ PI  + +   S + R  ITTK  RKKIPPNIPSVPIDGISFHHEENVQ+WKF VQ 
Subjt:  DEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRI-ITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQW

Query:  RIADE
        R+ADE
Subjt:  RIADE

KAA0040214.1 uncharacterized protein E6C27_scaffold2228G00100 [Cucumis melo var. makuwa]2.8e-1332.68Show/hide
Query:  MHRVRLRGGSRFKCIPECRTF------------GKSSIAGKSSKLPPNVFNLQSHSSL--SHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPP
        +H VR+R G RFK  P  R +             +   + +S  +P    +    SS+  +H  S   + D D D QDNVSL  LL+     KP +   P
Subjt:  MHRVRLRGGSRFKCIPECRTF------------GKSSIAGKSSKLPPNVFNLQSHSSL--SHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPP

Query:  FQSKNPPTSASPSEPVTSKP-ISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQS-------------------GDLPIPSNEPKSPIVPKS
          ++ P     PS+P+   P + +S S L   +P +     + ++I     S + TA++ EQ+                    D+P P+++P +P     
Subjt:  FQSKNPPTSASPSEPVTSKP-ISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQS-------------------GDLPIPSNEPKSPIVPKS

Query:  STVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE
              +P+ +T K GRKKIP N+ SVPIDGISFHHEE+VQ+WKF +Q RI DE
Subjt:  STVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE

KAA0045978.1 uncharacterized protein E6C27_scaffold243G005280 [Cucumis melo var. makuwa]2.8e-1338.66Show/hide
Query:  SHPTSSFELFDTDSDGQDNVSLATLLR---HSVPTKPFQNPPPFQSKNPPTSA--------------SPSEPVTSKPISTSTSSLFRDEPSSPVSKHLNS
        +H  S   + D D D QD+V L  LL+    SV +K   + PP  + +  +S+              SP+ P    P      S         V  H++ 
Subjt:  SHPTSSFELFDTDSDGQDNVSLATLLR---HSVPTKPFQNPPPFQSKNPPTSA--------------SPSEPVTSKPISTSTSSLFRDEPSSPVSKHLNS

Query:  FIP---LVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE
         IP   + P +  PTA  +E   + P  S  PK     K+  V  N    ITTK  RKKIP NIPSVPIDGISFHH ENVQ+WKF VQ RIADE
Subjt:  FIP---LVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE

KAA0054768.1 uncharacterized protein E6C27_scaffold437G00500 [Cucumis melo var. makuwa]9.6e-1437.55Show/hide
Query:  MHRVRLRGGSRFKCIPECRTF---GKSSIAGKSSKL-PPNVFNLQSHSSLSHP-----TSSFELFDTDSDGQDNVSLATLLRHS-VPTKPFQNP--PPFQ
        MH VR+ G   FK  P  R +    + S A  S +L  P   ++ S + ++       T    + D DSD  D+V LA LL+++ VP    + P  PP  
Subjt:  MHRVRLRGGSRFKCIPECRTF---GKSSIAGKSSKL-PPNVFNLQSHSSLSHP-----TSSFELFDTDSDGQDNVSLATLLRHS-VPTKPFQNP--PPFQ

Query:  SKNPPTSASPSEPVTSK-PISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNK----PRIITTKVGR
        S   P  +  S PV S  P +T+TS L  D               L P S+  + +     G + + ++E ++   P+ S  +  K     + ITTK GR
Subjt:  SKNPPTSASPSEPVTSK-PISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNK----PRIITTKVGR

Query:  KKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE
        KKIPPNIPS PIDGISFH EENVQ WKF VQ RIADE
Subjt:  KKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE

TYK27163.1 cell wall protein RBR3-like [Cucumis melo var. makuwa]1.9e-1434.78Show/hide
Query:  MHRVRLRGGSRFKCIPECRTFGKSSIAGKSSKLPPNVFNLQSHSSLSHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSASPSE
        MH VR+R  +RFK  P  R +          +LP      ++HS+LS         + DSD +D+V L  +L+  V  K   NP P  S    ++  PS 
Subjt:  MHRVRLRGGSRFKCIPECRTFGKSSIAGKSSKLPPNVFNLQSHSSLSHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSASPSE

Query:  PVTSKPISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKS----------EQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNI
            + +S    ++ +   SS V          VP S  PT+  S          E S D+  P ++       K S  +S +P++ITTK G +K+PPNI
Subjt:  PVTSKPISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKS----------EQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNI

Query:  PSVPIDGISFHHEENVQKWKFFVQWRIADE
        PS+PIDGISFH EE+V +WK+ VQ R ADE
Subjt:  PSVPIDGISFHHEENVQKWKFFVQWRIADE

TrEMBL top hitse value%identityAlignment
A0A5A7STQ8 Gag-pol polyprotein5.5e-1537.07Show/hide
Query:  SSIAGKSSKLPPNVFNLQSHSSLSHPTSSFE---LFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSAS-PSE---PVTSKPISTSTSSLFR
        + ++ + SK  P   +  +H+ L     +     LFD D D  D+V  A LL+ +   +   N  P  S + P S S PSE      S P   S     R
Subjt:  SSIAGKSSKLPPNVFNLQSHSSLSHPTSSFE---LFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSAS-PSE---PVTSKPISTSTSSLFR

Query:  DEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRI-ITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQW
         +  +     L+   P + +  +P A+ +  +    +P   P+ PI  + +   S + R  ITTK  RKKIPPNIPSVPIDGISFHHEENVQ+WKF VQ 
Subjt:  DEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRI-ITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQW

Query:  RIADE
        R+ADE
Subjt:  RIADE

A0A5A7T9R5 Integrase catalytic domain-containing protein1.4e-1332.68Show/hide
Query:  MHRVRLRGGSRFKCIPECRTF------------GKSSIAGKSSKLPPNVFNLQSHSSL--SHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPP
        +H VR+R G RFK  P  R +             +   + +S  +P    +    SS+  +H  S   + D D D QDNVSL  LL+     KP +   P
Subjt:  MHRVRLRGGSRFKCIPECRTF------------GKSSIAGKSSKLPPNVFNLQSHSSL--SHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPP

Query:  FQSKNPPTSASPSEPVTSKP-ISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQS-------------------GDLPIPSNEPKSPIVPKS
          ++ P     PS+P+   P + +S S L   +P +     + ++I     S + TA++ EQ+                    D+P P+++P +P     
Subjt:  FQSKNPPTSASPSEPVTSKP-ISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQS-------------------GDLPIPSNEPKSPIVPKS

Query:  STVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE
              +P+ +T K GRKKIP N+ SVPIDGISFHHEE+VQ+WKF +Q RI DE
Subjt:  STVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE

A0A5A7TSY4 Reverse transcriptase Ty1/copia-type domain-containing protein1.4e-1338.66Show/hide
Query:  SHPTSSFELFDTDSDGQDNVSLATLLR---HSVPTKPFQNPPPFQSKNPPTSA--------------SPSEPVTSKPISTSTSSLFRDEPSSPVSKHLNS
        +H  S   + D D D QD+V L  LL+    SV +K   + PP  + +  +S+              SP+ P    P      S         V  H++ 
Subjt:  SHPTSSFELFDTDSDGQDNVSLATLLR---HSVPTKPFQNPPPFQSKNPPTSA--------------SPSEPVTSKPISTSTSSLFRDEPSSPVSKHLNS

Query:  FIP---LVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE
         IP   + P +  PTA  +E   + P  S  PK     K+  V  N    ITTK  RKKIP NIPSVPIDGISFHH ENVQ+WKF VQ RIADE
Subjt:  FIP---LVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE

A0A5A7UIJ3 Uncharacterized protein4.7e-1437.55Show/hide
Query:  MHRVRLRGGSRFKCIPECRTF---GKSSIAGKSSKL-PPNVFNLQSHSSLSHP-----TSSFELFDTDSDGQDNVSLATLLRHS-VPTKPFQNP--PPFQ
        MH VR+ G   FK  P  R +    + S A  S +L  P   ++ S + ++       T    + D DSD  D+V LA LL+++ VP    + P  PP  
Subjt:  MHRVRLRGGSRFKCIPECRTF---GKSSIAGKSSKL-PPNVFNLQSHSSLSHP-----TSSFELFDTDSDGQDNVSLATLLRHS-VPTKPFQNP--PPFQ

Query:  SKNPPTSASPSEPVTSK-PISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNK----PRIITTKVGR
        S   P  +  S PV S  P +T+TS L  D               L P S+  + +     G + + ++E ++   P+ S  +  K     + ITTK GR
Subjt:  SKNPPTSASPSEPVTSK-PISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNK----PRIITTKVGR

Query:  KKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE
        KKIPPNIPS PIDGISFH EENVQ WKF VQ RIADE
Subjt:  KKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE

A0A5D3DU39 Cell wall protein RBR3-like9.4e-1534.78Show/hide
Query:  MHRVRLRGGSRFKCIPECRTFGKSSIAGKSSKLPPNVFNLQSHSSLSHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSASPSE
        MH VR+R  +RFK  P  R +          +LP      ++HS+LS         + DSD +D+V L  +L+  V  K   NP P  S    ++  PS 
Subjt:  MHRVRLRGGSRFKCIPECRTFGKSSIAGKSSKLPPNVFNLQSHSSLSHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSASPSE

Query:  PVTSKPISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKS----------EQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNI
            + +S    ++ +   SS V          VP S  PT+  S          E S D+  P ++       K S  +S +P++ITTK G +K+PPNI
Subjt:  PVTSKPISTSTSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKS----------EQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNI

Query:  PSVPIDGISFHHEENVQKWKFFVQWRIADE
        PS+PIDGISFH EE+V +WK+ VQ R ADE
Subjt:  PSVPIDGISFHHEENVQKWKFFVQWRIADE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGGGTTCGTCTACGAGGAGGGTCTCGTTTCAAATGTATCCCAGAATGTCGTACTTTTGGGAAATCATCCATTGCTGGTAAGTCTTCTAAGTTACCCCCTAATGT
GTTCAACTTACAGTCTCATTCGTCTTTGTCACATCCTACTTCTTCGTTTGAGCTTTTTGATACTGATTCAGACGGTCAAGATAATGTTAGTTTAGCTACTTTGCTTCGTC
ATTCTGTACCGACAAAACCTTTCCAGAACCCTCCTCCATTTCAATCTAAAAATCCTCCTACCTCTGCATCCCCATCCGAGCCTGTTACTTCTAAGCCTATCTCAACTTCT
ACCTCTTCTCTTTTTCGAGATGAGCCATCTTCTCCGGTTTCTAAACATCTAAACTCTTTTATCCCTTTAGTACCTAACTCGTCTATGCCTACAGCCTCTAAATCTGAACA
ATCGGGTGATCTCCCTATTCCTTCTAATGAGCCCAAATCTCCAATTGTTCCTAAATCCTCCACTGTTTCTTCCAATAAACCTCGCATTATCACTACCAAAGTTGGAAGGA
AAAAGATCCCTCCTAATATTCCTTCTGTTCCAATTGATGGAATCTCTTTTCATCATGAAGAAAATGTTCAAAAGTGGAAGTTTTTCGTTCAGTGGAGAATTGCTGATGAA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGCATAGGGTTCGTCTACGAGGAGGGTCTCGTTTCAAATGTATCCCAGAATGTCGTACTTTTGGGAAATCATCCATTGCTGGTAAGTCTTCTAAGTTACCCCCTAATGT
GTTCAACTTACAGTCTCATTCGTCTTTGTCACATCCTACTTCTTCGTTTGAGCTTTTTGATACTGATTCAGACGGTCAAGATAATGTTAGTTTAGCTACTTTGCTTCGTC
ATTCTGTACCGACAAAACCTTTCCAGAACCCTCCTCCATTTCAATCTAAAAATCCTCCTACCTCTGCATCCCCATCCGAGCCTGTTACTTCTAAGCCTATCTCAACTTCT
ACCTCTTCTCTTTTTCGAGATGAGCCATCTTCTCCGGTTTCTAAACATCTAAACTCTTTTATCCCTTTAGTACCTAACTCGTCTATGCCTACAGCCTCTAAATCTGAACA
ATCGGGTGATCTCCCTATTCCTTCTAATGAGCCCAAATCTCCAATTGTTCCTAAATCCTCCACTGTTTCTTCCAATAAACCTCGCATTATCACTACCAAAGTTGGAAGGA
AAAAGATCCCTCCTAATATTCCTTCTGTTCCAATTGATGGAATCTCTTTTCATCATGAAGAAAATGTTCAAAAGTGGAAGTTTTTCGTTCAGTGGAGAATTGCTGATGAA
TAA
Protein sequenceShow/hide protein sequence
MHRVRLRGGSRFKCIPECRTFGKSSIAGKSSKLPPNVFNLQSHSSLSHPTSSFELFDTDSDGQDNVSLATLLRHSVPTKPFQNPPPFQSKNPPTSASPSEPVTSKPISTS
TSSLFRDEPSSPVSKHLNSFIPLVPNSSMPTASKSEQSGDLPIPSNEPKSPIVPKSSTVSSNKPRIITTKVGRKKIPPNIPSVPIDGISFHHEENVQKWKFFVQWRIADE