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PI0022144 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022144
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:15376224..15378489
RNA-Seq ExpressionPI0022144
SyntenyPI0022144
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.2e-3452.87Show/hide
Query:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----
        S + G PLKVTK GVCGLVGHPN+KCPE+IE VN++RKYDPHGNTYNS WRDN NLRW NDNQK TQ+ S+SSNQ        +   TN  ++ +     
Subjt:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----

Query:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
                 ++  +         ANVS +SLR GKILDTPT+K+KK T  P+PL  K
Subjt:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-3352.87Show/hide
Query:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----
        S + G PLKVTK GVCGLVGHPN+KCPE+IE VN+++KYDPHGNTYNS WRDN NLRW NDNQK TQ+  +SSNQ        +   TN  ++ +     
Subjt:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----

Query:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
                 ++  +         ANVSVISLR  KILDTPT+K+KKVT  P+PL +K
Subjt:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-3347.5Show/hide
Query:  LARIMHHSAYSARKSSDRLKTYQAKVSRACLAFYLLSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRW
        ++R+  +S     K+S+   +   +VS    +  L  T    S + G PLKVTK GVCGLVGH N+KCPE+IE VN++R+YDPHGNTYNS WRDN NLRW
Subjt:  LARIMHHSAYSARKSSDRLKTYQAKVSRACLAFYLLSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRW

Query:  ENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH-------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
         NDNQK T + S+SS Q        +   TN  ++ +              K  G  + +  P G ANVSVISLR GKILDTPTSK+KKVT  P+PL +K
Subjt:  ENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH-------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-3351.22Show/hide
Query:  LSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTY
        ++T    S + G PLKVTK GVCGLVGH NEKCPE+IE VN++R+YDPH NTYNS WRDN NLRW NDNQK TQ+ S+SSNQ        +   TN  ++
Subjt:  LSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTY

Query:  YRH------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
         +              ++  +      +  ANVS ISLR GKILDTPT+K+KKVT  P+PL +K
Subjt:  YRH------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.8e-3352.87Show/hide
Query:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----
        S + G PLKVTK GVCGLVGHPN+KCPE+IE VN+++KYDPHGNTYNS WRDN NLRW NDNQK TQ+  +SSNQ        +   TN  ++ +     
Subjt:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----

Query:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
                 ++  +         ANVSVISLR  KILDTPT+K+KKVT  P+PL +K
Subjt:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.3e-3352.87Show/hide
Query:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----
        S + G PLKVTK GVCGLVGHPN+KCPE+IE VN+++KYDPHGNTYNS WRDN NLRW NDNQK TQ+  +SSNQ        +   TN  ++ +     
Subjt:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----

Query:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
                 ++  +         ANVSVISLR  KILDTPT+K+KKVT  P+PL +K
Subjt:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

A0A5A7V668 Retrotransposon gag protein1.7e-3347.5Show/hide
Query:  LARIMHHSAYSARKSSDRLKTYQAKVSRACLAFYLLSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRW
        ++R+  +S     K+S+   +   +VS    +  L  T    S + G PLKVTK GVCGLVGH N+KCPE+IE VN++R+YDPHGNTYNS WRDN NLRW
Subjt:  LARIMHHSAYSARKSSDRLKTYQAKVSRACLAFYLLSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRW

Query:  ENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH-------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
         NDNQK T + S+SS Q        +   TN  ++ +              K  G  + +  P G ANVSVISLR GKILDTPTSK+KKVT  P+PL +K
Subjt:  ENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH-------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

A0A5A7VQ60 Retrotransposon gag protein1.0e-3351.22Show/hide
Query:  LSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTY
        ++T    S + G PLKVTK GVCGLVGH NEKCPE+IE VN++R+YDPH NTYNS WRDN NLRW NDNQK TQ+ S+SSNQ        +   TN  ++
Subjt:  LSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTY

Query:  YRH------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
         +              ++  +      +  ANVS ISLR GKILDTPT+K+KKVT  P+PL +K
Subjt:  YRH------------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

A0A5D3CRR8 Retrotransposon gag protein3.5e-3452.87Show/hide
Query:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----
        S + G PLKVTK GVCGLVGHPN+KCPE+IE VN++RKYDPHGNTYNS WRDN NLRW NDNQK TQ+ S+SSNQ        +   TN  ++ +     
Subjt:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----

Query:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
                 ++  +         ANVS +SLR GKILDTPT+K+KK T  P+PL  K
Subjt:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

A0A5D3DCG3 Retrotransposon gag protein1.3e-3352.87Show/hide
Query:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----
        S + G PLKVTK GVCGLVGHPN+KCPE+IE VN+++KYDPHGNTYNS WRDN NLRW NDNQK TQ+  +SSNQ        +   TN  ++ +     
Subjt:  SNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWENDNQKPTQSTSSSSNQA-------RDETTNDSTYYRH----

Query:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK
                 ++  +         ANVSVISLR  KILDTPT+K+KKVT  P+PL +K
Subjt:  --------KQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCTGCAATCAGCTCGCATCTAGCTCGCATAATGCATCATTCTGCTTACTCAGCTCGCAAATCTTCTGATCGCCTAAAAACGTACCAAGCCAAGGTCAGTCGGGC
ATGCTTGGCGTTTTATCTTTTATCCACCGAATTCCCAAAGAGTAATCTTTCTGGTGGTCCTCTCAAAGTAACCAAGTATGGAGTTTGTGGCTTGGTTGGTCATCCAAATG
AAAAATGTCCTGAGTTGATCGAGGGTGTGAATGTTATTCGAAAGTATGACCCCCACGGTAATACATACAATTCGAGATGGAGAGACAATCTGAACTTGAGATGGGAGAAT
GACAACCAAAAGCCAACACAATCAACATCCTCCTCTTCAAACCAAGCAAGAGATGAAACAACAAATGACTCAACTTACTACCGTCATAAGCAAGTTGGATGGGAAAGGCA
CGCTTTCGGCCCAATAGGACCTGCGAACGTGAGTGTCATCTCGCTAAGGAGAGGTAAGATTCTTGACACCCCTACTAGTAAAGACAAAAAGGTTACTCCCAATCCTATCC
CTCTTGAGAATAAGAAAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCTGCAATCAGCTCGCATCTAGCTCGCATAATGCATCATTCTGCTTACTCAGCTCGCAAATCTTCTGATCGCCTAAAAACGTACCAAGCCAAGGTCAGTCGGGC
ATGCTTGGCGTTTTATCTTTTATCCACCGAATTCCCAAAGAGTAATCTTTCTGGTGGTCCTCTCAAAGTAACCAAGTATGGAGTTTGTGGCTTGGTTGGTCATCCAAATG
AAAAATGTCCTGAGTTGATCGAGGGTGTGAATGTTATTCGAAAGTATGACCCCCACGGTAATACATACAATTCGAGATGGAGAGACAATCTGAACTTGAGATGGGAGAAT
GACAACCAAAAGCCAACACAATCAACATCCTCCTCTTCAAACCAAGCAAGAGATGAAACAACAAATGACTCAACTTACTACCGTCATAAGCAAGTTGGATGGGAAAGGCA
CGCTTTCGGCCCAATAGGACCTGCGAACGTGAGTGTCATCTCGCTAAGGAGAGGTAAGATTCTTGACACCCCTACTAGTAAAGACAAAAAGGTTACTCCCAATCCTATCC
CTCTTGAGAATAAGAAAATTTAG
Protein sequenceShow/hide protein sequence
MKSAISSHLARIMHHSAYSARKSSDRLKTYQAKVSRACLAFYLLSTEFPKSNLSGGPLKVTKYGVCGLVGHPNEKCPELIEGVNVIRKYDPHGNTYNSRWRDNLNLRWEN
DNQKPTQSTSSSSNQARDETTNDSTYYRHKQVGWERHAFGPIGPANVSVISLRRGKILDTPTSKDKKVTPNPIPLENKKI