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PI0022178 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022178
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTranscription termination factor like
Genome locationchr04:10763161..10763759
RNA-Seq ExpressionPI0022178
SyntenyPI0022178
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606858.1 hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia]3.3e-2773.4Show/hide
Query:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVR
        M PI E DAGE  V+IAMF+ +QLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRRFLAALSD+P GGELSPS +V TPS + R+ SDDG R
Subjt:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVR

KAG7018107.1 hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2776.6Show/hide
Query:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVR
        M  I E D   + ++IAMFVF+Q+LVYLILSKSSNLFS D+KLRSLSFKPARSVSIRR LAALSDLPPGGELSPS  V TPSSVRR+RSDD  R
Subjt:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVR

XP_008461750.1 PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]3.7e-3185.26Show/hide
Query:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL
        MTPI ETDAGEM VRIAMFVF+QLLVYLILSKSSNLFS DQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS       PSSVRR RSDDG +L
Subjt:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]3.5e-3792.63Show/hide
Query:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL
        MTPIF+TDAGEM VRIAMFVFIQLLVYLILSKSSNLFS DQK+RSLSFKPARSVSIRRFLAALSDLPPGGELSPS KVSTPSS RRDRSDDG RL
Subjt:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]1.5e-3282.98Show/hide
Query:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVR
        MTPI E+D  EM V+IAMF F+QLLVYLILSKSSNLFS DQKLRSLSFKPARSVSIRRFLAALSDLPPGGE+SP+P+V TPSS RRD SDDG R
Subjt:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVR

TrEMBL top hitse value%identityAlignment
A0A1S3CFW1 uncharacterized protein LOC1035002811.8e-3185.26Show/hide
Query:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL
        MTPI ETDAGEM VRIAMFVF+QLLVYLILSKSSNLFS DQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS       PSSVRR RSDDG +L
Subjt:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL

A0A438IA56 Uncharacterized protein3.7e-1664.94Show/hide
Query:  FETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTP
        FE+   +M++++ MFV +Q LVYLILSKSSN+FS + K RS  FKPARSVSIRR LA L+DLPPGGELSPSP    P
Subjt:  FETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTP

A0A5A7UC63 Uncharacterized protein1.8e-3185.26Show/hide
Query:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL
        MTPI ETDAGEM VRIAMFVF+QLLVYLILSKSSNLFS DQKLRSLSFKPARSVSIRRFLAALSDLPPGGELS       PSSVRR RSDDG +L
Subjt:  MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL

B9REM2 Uncharacterized protein2.2e-1668.92Show/hide
Query:  IFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPK
        I E+  G+M++++AMF  +Q LVY+ILSKSSN+FS   K RS SFKPARSVSIRRFLAAL DLP  GELSPSPK
Subjt:  IFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPK

F6HPS7 Uncharacterized protein3.7e-1664.94Show/hide
Query:  FETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTP
        FE+   +M++++ MFV +Q LVYLILSKSSN+FS + K RS  FKPARSVSIRR LA L+DLPPGGELSPSP    P
Subjt:  FETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein6.4e-1350.62Show/hide
Query:  MIVRIAMFVFIQLLVYLILSKSSNLFSTDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPS-------PKVSTPSSV
        M++++++F  IQ LVYLILSKSS++FST + + R+ SF+ ARS+SIRR LA L D+P GGE+SPS         +S+PS +
Subjt:  MIVRIAMFVFIQLLVYLILSKSSNLFSTDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPS-------PKVSTPSSV

AT2G31945.1 unknown protein4.9e-1353.33Show/hide
Query:  GEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSS
        G M++++A+F  +Q LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P G ++SPS   S+ SS
Subjt:  GEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKL-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCCGATTTTCGAAACCGATGCCGGCGAGATGATCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTT
CTCCACCGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCTGTCAGTATTCGCCGGTTTCTGGCGGCTCTTTCTGACCTTCCTCCCGGCGGTGAGCTTTCTC
CGTCGCCGAAAGTTTCGACTCCGTCGTCCGTTCGTCGCGATCGTTCCGATGACGGTGTCAGGTTGTAA
mRNA sequenceShow/hide mRNA sequence
CCAATTTCACTCCCATCTTTTTCATCCAGCGACTCAACATTTCACCTCTTCCATCTCAGATTTTTCGTCCTCAATCCTTCACTATGACGCCGATTTTCGAAACCGATGCC
GGCGAGATGATCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTTCTCCACCGACCAGAAATTGAGATCTCT
CAGCTTTAAACCGGCTCGTTCTGTCAGTATTCGCCGGTTTCTGGCGGCTCTTTCTGACCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGCCGAAAGTTTCGACTCCGTCGT
CCGTTCGTCGCGATCGTTCCGATGACGGTGTCAGGTTGTAAAGAGTCGAATCGGATCGGATCGAATTGAATCGATTCCGATTGACCTGTATTGGGTTAGCTATGTAAATT
GATAAAAGAGTAGGGGTAATTTATGTTATTTATTAAAAATAGAGGGGTTAGTTTTGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAA
TGGTAATGGAAATTATTATTTTCTTTTTATCCATTTAAAACATTTTCAA
Protein sequenceShow/hide protein sequence
MTPIFETDAGEMIVRIAMFVFIQLLVYLILSKSSNLFSTDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKVSTPSSVRRDRSDDGVRL