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PI0022212 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022212
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:21111324..21111933
RNA-Seq ExpressionPI0022212
SyntenyPI0022212
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]5.1e-6276.16Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-6175.5Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+ TQA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-6176.16Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+ TQA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-6276.82Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]2.5e-6174.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.2e-6174.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

A0A5D3CB46 Retrotransposon gag protein9.4e-6276.16Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+ TQA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

A0A5D3CFE7 Retrotransposon gag protein8.5e-6376.82Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q  TQA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

A0A5D3CRR8 Retrotransposon gag protein5.5e-6275.5Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+ TQA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

E5GBZ4 Retrotransposon gag protein2.5e-6276.16Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+ TQA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCTACACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTG
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGAAAACCCCCCC
AAGTGAAGAAAAGATTGGCCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCTACACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTG
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGAAAACCCCCCC
AAGTGAAGAAAAGATTGGCCCCTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPTQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
TNAISKLEGKGKLPAQPDHANVSAISLRSGKILKTPPSEEKIGP