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PI0022280 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022280
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr11:16244102..16245477
RNA-Seq ExpressionPI0022280
SyntenyPI0022280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031700.1 hypothetical protein E6C27_scaffold139G004840 [Cucumis melo var. makuwa]1.9e-1538.95Show/hide
Query:  MLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQA--
        M++Y I  K  +NL  +I  SI+SWM+ P+G MPFPST+EALC+K VP L A +  PI G + +Q +LN  IT H +KE ER  KTL     E    +  
Subjt:  MLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQA--

Query:  -----DRKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQ-RDSSHSQPPSHSLPIPS
              +++KA    S+ + K K+ K DAT  P+PL I+  +  L      K Q    S+  PP   L + S
Subjt:  -----DRKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQ-RDSSHSQPPSHSLPIPS

KAA0057279.1 hypothetical protein E6C27_scaffold280G001200 [Cucumis melo var. makuwa]6.7e-1335.83Show/hide
Query:  INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEG
        I LE AM++YCI  K  +NL  +I  SI+S M+APK  MPFP T++ALC+K VP L      PI  G+C Q +LN  I  H +KE ER  KTL     E 
Subjt:  INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEG

Query:  ATQAD-----RKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQRDSSHSQPPSHSLPIPSRQPSPIISPIIH
           +      +++K+  +V + Q K K+ +      P+PL I      L    PS   +  S   P  H   + ++ P P  + I+H
Subjt:  ATQAD-----RKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQRDSSHSQPPSHSLPIPSRQPSPIISPIIH

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2238.55Show/hide
Query:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALK-----------------------LTTEASVWLF
        K+RM VV   Y  K N  +  + I      FN E IN+LY  PND E  G E V   TK +A+EALK                       LTT+A+VW+F
Subjt:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALK-----------------------LTTEASVWLF

Query:  F-------------INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP
        F             I+++  ++LYCIM KK INL ++I  +I++WM+ PK AMPFPS +E LC+K +P L       IP
Subjt:  F-------------INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP

KAA0063168.1 hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa]5.2e-1328.72Show/hide
Query:  KGHTKLRMGVVENIY-AAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKKR
        K   K R   +E++    K   ++    + G  V F  + IN+LYGLPND +    + +I+  ++  ++ +    +++     I +E  + LYCIM KK 
Subjt:  KGHTKLRMGVVENIY-AAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKKR

Query:  INLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQAD
         NL  ++  + + WM+ PKG+  FP+  +  C K +  L       + GG CN  SLN + T + +KE E + K      ++ AT  D
Subjt:  INLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQAD

TYK05842.1 gag/pol protein [Cucumis melo var. makuwa]8.5e-1638.62Show/hide
Query:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKK--RINL
        K+RM VV   Y  K N  +  + I      FN E IN+LY  PND E  G E V   TK +A+EALK+     +      ++    LY  +T K   INL
Subjt:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKK--RINL

Query:  SDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP
         ++I  +I++WM+ PK  MPFPS +E LC+K +P L       IP
Subjt:  SDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP

TrEMBL top hitse value%identityAlignment
A0A5A7SLS8 Uncharacterized protein9.2e-1638.95Show/hide
Query:  MLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQA--
        M++Y I  K  +NL  +I  SI+SWM+ P+G MPFPST+EALC+K VP L A +  PI G + +Q +LN  IT H +KE ER  KTL     E    +  
Subjt:  MLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQA--

Query:  -----DRKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQ-RDSSHSQPPSHSLPIPS
              +++KA    S+ + K K+ K DAT  P+PL I+  +  L      K Q    S+  PP   L + S
Subjt:  -----DRKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQ-RDSSHSQPPSHSLPIPS

A0A5A7UUR1 Uncharacterized protein3.3e-1335.83Show/hide
Query:  INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEG
        I LE AM++YCI  K  +NL  +I  SI+S M+APK  MPFP T++ALC+K VP L      PI  G+C Q +LN  I  H +KE ER  KTL     E 
Subjt:  INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEG

Query:  ATQAD-----RKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQRDSSHSQPPSHSLPIPSRQPSPIISPIIH
           +      +++K+  +V + Q K K+ +      P+PL I      L    PS   +  S   P  H   + ++ P P  + I+H
Subjt:  ATQAD-----RKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQRDSSHSQPPSHSLPIPSRQPSPIISPIIH

A0A5A7V6C0 Uncharacterized protein2.5e-1328.72Show/hide
Query:  KGHTKLRMGVVENIY-AAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKKR
        K   K R   +E++    K   ++    + G  V F  + IN+LYGLPND +    + +I+  ++  ++ +    +++     I +E  + LYCIM KK 
Subjt:  KGHTKLRMGVVENIY-AAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKKR

Query:  INLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQAD
         NL  ++  + + WM+ PKG+  FP+  +  C K +  L       + GG CN  SLN + T + +KE E + K      ++ AT  D
Subjt:  INLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQAD

A0A5A7V6M5 Gag/pol protein1.7e-2238.55Show/hide
Query:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALK-----------------------LTTEASVWLF
        K+RM VV   Y  K N  +  + I      FN E IN+LY  PND E  G E V   TK +A+EALK                       LTT+A+VW+F
Subjt:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALK-----------------------LTTEASVWLF

Query:  F-------------INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP
        F             I+++  ++LYCIM KK INL ++I  +I++WM+ PK AMPFPS +E LC+K +P L       IP
Subjt:  F-------------INLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP

A0A5D3C3P6 Gag/pol protein4.1e-1638.62Show/hide
Query:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKK--RINL
        K+RM VV   Y  K N  +  + I      FN E IN+LY  PND E  G E V   TK +A+EALK+     +      ++    LY  +T K   INL
Subjt:  KLRMGVVENIYAAKLNVEEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKK--RINL

Query:  SDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP
         ++I  +I++WM+ PK  MPFPS +E LC+K +P L       IP
Subjt:  SDLIATSIMSWMQAPKGAMPFPSTVEALCVKVVPFLCAMNTMPIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGCGGACCTGAGCAAACAAGTGGCGGAGCTCCCTGCGAAGTTTAAGGCTTTAGAGCTAGAGAAAGACCTCGAGGTCATTGCTGAAGAACTCGAGGATGAGCTGGA
GGCGATGAGCCCAATTGAGCAAGGGCCATCGCCTAAAAACCAAAGGGAGGTCGCCGAGCCATCAGAAGGGAAAAAGAAAATTGGGGACTCTGGACCTGAAGAGCACCCAA
CAGGCTGCGAAGCCAAAGCGAAAACACCCTCAATCAACTCACTCATAAAGGGGCACACCAAGTTAAGAATGGGTGTGGTGGAAAATATTTACGCCGCTAAGCTCAATGTT
GAGGAGTTTAGCGTAGAAATCAGTGGAAGGACGGTGAGCTTCAACGAGGAGGCCATTAACGATCTATATGGTTTGCCCAACGACGTTGAGACGCCTGGGCATGAATACGT
TATCAGTCGAACCAAAAAAATGGCCCGTGAAGCGTTAAAACTGACCACAGAGGCAAGTGTGTGGCTCTTCTTCATCAACTTAGAGTCAGCGATGCTGCTTTACTGCATAA
TGACGAAGAAGCGCATCAACCTCAGCGATCTAATAGCTACATCCATCATGTCTTGGATGCAAGCTCCTAAGGGCGCCATGCCCTTCCCATCCACAGTTGAAGCCCTCTGC
GTGAAGGTTGTGCCTTTTCTATGCGCCATGAACACAATGCCAATTCCAGGCGGCCTATGCAATCAGATGTCTTTGAATTGTATGATCACCTTCCATGCCCACAAAGAAAT
GGAAAGGCGGTCAAAGACATTGGGTGACACAGCAAGTGAAGGCGCAACCCAAGCAGATCGCAAACGCAAAGCCCCAACCACCGTATCAACTCCTCAACCAAAAGTCAAAA
AACCAAAAGTTGATGCGACGAGCCAACCCCAGCCACTTAAAATCATCCATCCATCTTCCCGCCTAGTCAAGAGAACTCCCTCTAAAATCCAAAGAGATTCCAGCCACTCT
CAACCGCCTAGCCACTCTTTGCCTATTCCATCACGTCAACCTTCACCCATCATATCCCCCATCATTCACTACTCCCCCACATTTTATCACCCATCCACGCACCCAACCTA
TCTCCCCGCACTCGTACCCCTCCGCCCACAAAAACAACAACTTCCATCCTTCCTCCAAATAAACCTTCCCCTAGGCGAGCTGACACATTATCGCCTCTTATTCTATCACC
CATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGCGGACCTGAGCAAACAAGTGGCGGAGCTCCCTGCGAAGTTTAAGGCTTTAGAGCTAGAGAAAGACCTCGAGGTCATTGCTGAAGAACTCGAGGATGAGCTGGA
GGCGATGAGCCCAATTGAGCAAGGGCCATCGCCTAAAAACCAAAGGGAGGTCGCCGAGCCATCAGAAGGGAAAAAGAAAATTGGGGACTCTGGACCTGAAGAGCACCCAA
CAGGCTGCGAAGCCAAAGCGAAAACACCCTCAATCAACTCACTCATAAAGGGGCACACCAAGTTAAGAATGGGTGTGGTGGAAAATATTTACGCCGCTAAGCTCAATGTT
GAGGAGTTTAGCGTAGAAATCAGTGGAAGGACGGTGAGCTTCAACGAGGAGGCCATTAACGATCTATATGGTTTGCCCAACGACGTTGAGACGCCTGGGCATGAATACGT
TATCAGTCGAACCAAAAAAATGGCCCGTGAAGCGTTAAAACTGACCACAGAGGCAAGTGTGTGGCTCTTCTTCATCAACTTAGAGTCAGCGATGCTGCTTTACTGCATAA
TGACGAAGAAGCGCATCAACCTCAGCGATCTAATAGCTACATCCATCATGTCTTGGATGCAAGCTCCTAAGGGCGCCATGCCCTTCCCATCCACAGTTGAAGCCCTCTGC
GTGAAGGTTGTGCCTTTTCTATGCGCCATGAACACAATGCCAATTCCAGGCGGCCTATGCAATCAGATGTCTTTGAATTGTATGATCACCTTCCATGCCCACAAAGAAAT
GGAAAGGCGGTCAAAGACATTGGGTGACACAGCAAGTGAAGGCGCAACCCAAGCAGATCGCAAACGCAAAGCCCCAACCACCGTATCAACTCCTCAACCAAAAGTCAAAA
AACCAAAAGTTGATGCGACGAGCCAACCCCAGCCACTTAAAATCATCCATCCATCTTCCCGCCTAGTCAAGAGAACTCCCTCTAAAATCCAAAGAGATTCCAGCCACTCT
CAACCGCCTAGCCACTCTTTGCCTATTCCATCACGTCAACCTTCACCCATCATATCCCCCATCATTCACTACTCCCCCACATTTTATCACCCATCCACGCACCCAACCTA
TCTCCCCGCACTCGTACCCCTCCGCCCACAAAAACAACAACTTCCATCCTTCCTCCAAATAAACCTTCCCCTAGGCGAGCTGACACATTATCGCCTCTTATTCTATCACC
CATATTAG
Protein sequenceShow/hide protein sequence
MFADLSKQVAELPAKFKALELEKDLEVIAEELEDELEAMSPIEQGPSPKNQREVAEPSEGKKKIGDSGPEEHPTGCEAKAKTPSINSLIKGHTKLRMGVVENIYAAKLNV
EEFSVEISGRTVSFNEEAINDLYGLPNDVETPGHEYVISRTKKMAREALKLTTEASVWLFFINLESAMLLYCIMTKKRINLSDLIATSIMSWMQAPKGAMPFPSTVEALC
VKVVPFLCAMNTMPIPGGLCNQMSLNCMITFHAHKEMERRSKTLGDTASEGATQADRKRKAPTTVSTPQPKVKKPKVDATSQPQPLKIIHPSSRLVKRTPSKIQRDSSHS
QPPSHSLPIPSRQPSPIISPIIHYSPTFYHPSTHPTYLPALVPLRPQKQQLPSFLQINLPLGELTHYRLLFYHPY