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PI0022288 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022288
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr11:22502381..22502950
RNA-Seq ExpressionPI0022288
SyntenyPI0022288
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]6.9e-5372.96Show/hide
Query:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV
        RGR  STSSKG R  SS NS PSPMSA QY +DL FT VTR ++R S I I SPTESSTPPRPS NL+ PSGGV QMRP ASP SN ESSTPPTTYSQ V
Subjt:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV

Query:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTR
        T +KRF+PRPEIK+YFQK +V+Y  IIEPEYQSLTL+E+ SKIFP+DFNFLPEDL+K +
Subjt:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]2.0e-5273.89Show/hide
Query:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV
        RGR  STSSKG+RL SS NSAPSPMSADQYA+DL FT VTR ++R S I I  PTESSTPPRPSANL+ P G V QM+P ASP SN +SSTPPTTYSQ V
Subjt:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV

Query:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRK
        TP+KRF+PRP+IK YFQK +V+Y   IE EYQSLTL+E  SKIFPEDFNFLPEDLRK
Subjt:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.4e-6076.47Show/hide
Query:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV
        RGR  STSSKG+R  SS NSAPSP+SADQYA+DL FTTVTRF +RS  I I SPTESSTPPRPS NL+ PS GV QMRP ASP SN ESSTPPTTYSQ V
Subjt:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV

Query:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKFYKFILVDTK
        TP+KRF+PRPEIK+YFQK +V+Y  IIE EYQSLT +E  SKIFPEDFNFL EDLRKTRKFY+FIL DTK
Subjt:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKFYKFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]3.9e-4875.18Show/hide
Query:  MSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVVTPEKRFIPRPEIKTYFQKQVVIYV
        MSADQYA+DL FTTVTR ++RSS IRIES TESSTPPRPSANL+ P GG  QMRP ASP SN ESSTPPTTYSQ VTP+KRF+PRPEIK+YFQK +V+Y 
Subjt:  MSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVVTPEKRFIPRPEIKTYFQKQVVIYV

Query:  HIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKF
         IIEPEYQS+TL++  SKIF ++FN LPEDLRKTR F
Subjt:  HIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]1.5e-5275.16Show/hide
Query:  RAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVVTP
        RA STSS+G+R  SS NSAPSPMSADQYA+DL FTTVTR +ARSS I+I SPT+SSTPPR SANL+ PS  V QMRP ASPLSN ESSTPPTTYSQV+TP
Subjt:  RAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVVTP

Query:  EKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDL
        +KRF+PR EIK+YFQK V++Y  IIEPEYQSLTL+E  SKIFP++FNFLP+DL
Subjt:  EKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDL

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein1.7e-6076.47Show/hide
Query:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV
        RGR  STSSKG+R  SS NSAPSP+SADQYA+DL FTTVTRF +RS  I I SPTESSTPPRPS NL+ PS GV QMRP ASP SN ESSTPPTTYSQ V
Subjt:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV

Query:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKFYKFILVDTK
        TP+KRF+PRPEIK+YFQK +V+Y  IIE EYQSLT +E  SKIFPEDFNFL EDLRKTRKFY+FIL DTK
Subjt:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKFYKFILVDTK

A0A5D3BM67 Uncharacterized protein1.9e-4875.18Show/hide
Query:  MSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVVTPEKRFIPRPEIKTYFQKQVVIYV
        MSADQYA+DL FTTVTR ++RSS IRIES TESSTPPRPSANL+ P GG  QMRP ASP SN ESSTPPTTYSQ VTP+KRF+PRPEIK+YFQK +V+Y 
Subjt:  MSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVVTPEKRFIPRPEIKTYFQKQVVIYV

Query:  HIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKF
         IIEPEYQS+TL++  SKIF ++FN LPEDLRKTR F
Subjt:  HIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKF

A0A5D3BPD3 Uncharacterized protein3.8e-4165.77Show/hide
Query:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV
        RGR  STSSKG+   SS NSAPSP  ADQYA+++ FTTVTR ++RSS+IRI S TES+TPPRPS NL+HPS GV QMRP ASP SN ESSTP TTYSQ V
Subjt:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV

Query:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQ--SLTLDEIPSKIFPED
        TP+KRF+PRPEIK+YFQK +V+Y  IIE EYQ  + +  + PS    ED
Subjt:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQ--SLTLDEIPSKIFPED

A0A5D3E4J4 Uncharacterized protein9.8e-5373.89Show/hide
Query:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV
        RGR  STSSKG+RL SS NSAPSPMSADQYA+DL FT VTR ++R S I I  PTESSTPPRPSANL+ P G V QM+P ASP SN +SSTPPTTYSQ V
Subjt:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV

Query:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRK
        TP+KRF+PRP+IK YFQK +V+Y   IE EYQSLTL+E  SKIFPEDFNFLPEDLRK
Subjt:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRK

E5GCE6 Uncharacterized protein3.4e-5372.96Show/hide
Query:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV
        RGR  STSSKG R  SS NS PSPMSA QY +DL FT VTR ++R S I I SPTESSTPPRPS NL+ PSGGV QMRP ASP SN ESSTPPTTYSQ V
Subjt:  RGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVV

Query:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTR
        T +KRF+PRPEIK+YFQK +V+Y  IIEPEYQSLTL+E+ SKIFP+DFNFLPEDL+K +
Subjt:  TPEKRFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATAGTTCGTGGCAGAGGAAGAGCAATCTCTACCTCTTCAAAAGGTAGTCGCCTATTTTCTTCATTAAATTCTGCACCCTCACCCATGAGTGCAGATCAATATGC
AATAGATTTGAGGTTTACTACAGTAACCCGATTTAAAGCAAGATCGTCTGACATACGGATTGAATCTCCTACGGAGTCTTCTACTCCACCTAGGCCTTCGGCCAATCTTG
TCCATCCTTCTGGCGGAGTAACTCAAATGAGGCCTCATGCCTCTCCTTTATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGTCGTCACTCCAGAAAAA
CGATTCATACCAAGGCCCGAGATCAAAACATATTTTCAAAAACAAGTTGTAATCTATGTTCATATCATAGAACCAGAATATCAAAGTCTCACTCTAGATGAGATACCTTC
AAAAATCTTCCCTGAGGACTTTAATTTCCTTCCAGAAGACCTCAGAAAAACTAGAAAATTTTACAAGTTTATTCTAGTAGACACCAAGTCTGTGGAAATAACTCATGTAC
CAGATAAAAATGATCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATAGTTCGTGGCAGAGGAAGAGCAATCTCTACCTCTTCAAAAGGTAGTCGCCTATTTTCTTCATTAAATTCTGCACCCTCACCCATGAGTGCAGATCAATATGC
AATAGATTTGAGGTTTACTACAGTAACCCGATTTAAAGCAAGATCGTCTGACATACGGATTGAATCTCCTACGGAGTCTTCTACTCCACCTAGGCCTTCGGCCAATCTTG
TCCATCCTTCTGGCGGAGTAACTCAAATGAGGCCTCATGCCTCTCCTTTATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGTCGTCACTCCAGAAAAA
CGATTCATACCAAGGCCCGAGATCAAAACATATTTTCAAAAACAAGTTGTAATCTATGTTCATATCATAGAACCAGAATATCAAAGTCTCACTCTAGATGAGATACCTTC
AAAAATCTTCCCTGAGGACTTTAATTTCCTTCCAGAAGACCTCAGAAAAACTAGAAAATTTTACAAGTTTATTCTAGTAGACACCAAGTCTGTGGAAATAACTCATGTAC
CAGATAAAAATGATCCTTAA
Protein sequenceShow/hide protein sequence
MSIVRGRGRAISTSSKGSRLFSSLNSAPSPMSADQYAIDLRFTTVTRFKARSSDIRIESPTESSTPPRPSANLVHPSGGVTQMRPHASPLSNMESSTPPTTYSQVVTPEK
RFIPRPEIKTYFQKQVVIYVHIIEPEYQSLTLDEIPSKIFPEDFNFLPEDLRKTRKFYKFILVDTKSVEITHVPDKNDP