CuGenDBv2

Gene ID	PI0022309
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr03:13169144..13169455
RNA-Seq Expression	PI0022309
Synteny	PI0022309
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035532.1 uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]

2.5e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

KAA0036604.1 polyprotein [Cucumis melo var. makuwa]

1.9e-41

86.41

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDVIRNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

TYK18566.1 uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa]

2.5e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZ91 Polyprotein

9.4e-42

86.41

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDVIRNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

A0A5A7UXR6 Reverse transcriptase

1.2e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

A0A5D3BRZ6 Reverse transcriptase

1.2e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

A0A5D3C4R1 Reverse transcriptase

1.2e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

A0A5D3DQ20 Retrotrans_gag domain-containing protein

1.2e-41

85.44

Show/hide

Query:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA
        MINGMSEDFRA LDV+RNEIA+V+AR++LTMRAMANQA  GGAI V+RVKIPEPKPFCGARDAKA EN+IFDLEQYFRATNTV EEAKVTL TMHL+EDA
Subjt:  MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDA

Query:  KLW
        KLW
Subjt:  KLW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATAAATGGCATGTCAGAGGATTTTCGTGCCGCCCTTGATGTCATCAGGAATGAGATCGCAAACGTGAGCGCGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCA
AGCTCTAATTGGAGGAGCTATACAAGTTAACAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCGAGGGACGCAAAAGCCTTTGAGAACTTCATATTTGACCTCG
AACAATACTTTCGGGCCACAAACACTGTTGCGGAGGAAGCGAAAGTGACACTGACAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MINGMSEDFRAALDVIRNEIANVSARVNLTMRAMANQALIGGAIQVNRVKIPEPKPFCGARDAKAFENFIFDLEQYFRATNTVAEEAKVTLTTMHLAEDAKLW

PI0022309 (gene) of Melon (PI 482460) v1 genome