; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0022317 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022317
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:12851684..12851887
RNA-Seq ExpressionPI0022317
SyntenyPI0022317
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053146.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.7e-2277.61Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCL HNLINREMTN D+ DD+DE DSTHATT GDDI+YIET+NEW+QW+D+LAE MFSDWEL NQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2280.6Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        MACCLLHNLINREMTN+++ DDLDEGDST+ATT GD+I+YIE SNEWS+WRDQLA TMFSDWEL+ Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

KAA0067470.1 retrotransposon protein [Cucumis melo var. makuwa]7.7e-2382.09Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFSDWELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

TYJ99699.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.7e-2382.09Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFSDWELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

TYK27175.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-2280.6Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFS+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

TrEMBL top hitse value%identityAlignment
A0A5A7UFY9 Putative nuclease HARBI18.3e-2377.61Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCL HNLINREMTN D+ DD+DE DSTHATT GDDI+YIET+NEW+QW+D+LAE MFSDWEL NQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

A0A5A7VJX3 Retrotransposon protein3.7e-2382.09Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFSDWELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

A0A5D3BL48 Putative nuclease HARBI13.7e-2382.09Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFSDWELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

A0A5D3DG22 Retrotransposon protein8.3e-2380.6Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        MACCLLHNLINREMTN+++ DDLDEGDST+ATT GD+I+YIE SNEWS+WRDQLA TMFSDWEL+ Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

A0A5D3DV38 Retrotransposon protein1.1e-2280.6Show/hide
Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFS+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGATATGAACGACGATCTGGACGAGGGTGATTCGACCCACGCTACTACGAGAGGTGATGA
TATTAGTTACATTGAGACATCAAACGAATGGAGTCAATGGAGGGATCAATTGGCTGAGACGATGTTCAGTGATTGGGAGTTACGTAACCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGATATGAACGACGATCTGGACGAGGGTGATTCGACCCACGCTACTACGAGAGGTGATGA
TATTAGTTACATTGAGACATCAAACGAATGGAGTCAATGGAGGGATCAATTGGCTGAGACGATGTTCAGTGATTGGGAGTTACGTAACCAGTAG
Protein sequenceShow/hide protein sequence
MACCLLHNLINREMTNNDMNDDLDEGDSTHATTRGDDISYIETSNEWSQWRDQLAETMFSDWELRNQ