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PI0022344 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022344
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr02:16777712..16778065
RNA-Seq ExpressionPI0022344
SyntenyPI0022344
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047903.1 retrotransposon polyprotein [Cucumis melo var. makuwa]1.6e-0757.69Show/hide
Query:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYV
        +T+FG+ L+S+LIVK DE NYSLW +MV++VL  +K+DGFVL TK KP++ +
Subjt:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYV

KGN65642.1 hypothetical protein Csa_019906 [Cucumis sativus]4.2e-0842.05Show/hide
Query:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQKTQNYLATRNLKNGTLLTKLYLVGCRAQ
        NTSFG+PL++ L +K D++ + LWR MVL VL+G+KVDG+VL  K +P + + +  E    T   +  + LKN     KL+L G   Q
Subjt:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQKTQNYLATRNLKNGTLLTKLYLVGCRAQ

XP_022143579.1 ankyrin repeat-containing protein NPR4-like [Momordica charantia]6.9e-1152.11Show/hide
Query:  TTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKE
        TT+ S+   V    N SFG+PL++ L VK D++NY+LW+ MVL VL G+KVDG+VL TK  P++Y TTT +
Subjt:  TTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKE

XP_022157748.1 uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]8.5e-0939.6Show/hide
Query:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY
        M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL VL+G+K DG+VL T  KP +++ +     T + +Q    Y
Subjt:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY

Query:  L
        +
Subjt:  L

XP_022157750.1 uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]8.5e-0939.6Show/hide
Query:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY
        M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL VL+G+K DG+VL T  KP +++ +     T + +Q    Y
Subjt:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY

Query:  L
        +
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A0A0LXU0 Uncharacterized protein2.0e-0842.05Show/hide
Query:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQKTQNYLATRNLKNGTLLTKLYLVGCRAQ
        NTSFG+PL++ L +K D++ + LWR MVL VL+G+KVDG+VL  K +P + + +  E    T   +  + LKN     KL+L G   Q
Subjt:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQKTQNYLATRNLKNGTLLTKLYLVGCRAQ

A0A5A7TWE0 Retrotransposon polyprotein7.7e-0857.69Show/hide
Query:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYV
        +T+FG+ L+S+LIVK DE NYSLW +MV++VL  +K+DGFVL TK KP++ +
Subjt:  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYV

A0A6J1CPQ7 ankyrin repeat-containing protein NPR4-like3.4e-1152.11Show/hide
Query:  TTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKE
        TT+ S+   V    N SFG+PL++ L VK D++NY+LW+ MVL VL G+KVDG+VL TK  P++Y TTT +
Subjt:  TTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKE

A0A6J1DTZ7 uncharacterized protein LOC111024384 isoform X24.1e-0939.6Show/hide
Query:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY
        M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL VL+G+K DG+VL T  KP +++ +     T + +Q    Y
Subjt:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY

Query:  L
        +
Subjt:  L

A0A6J1DU77 uncharacterized protein LOC111024384 isoform X14.1e-0939.6Show/hide
Query:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY
        M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL VL+G+K DG+VL T  KP +++ +     T + +Q    Y
Subjt:  MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNY

Query:  L
        +
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATGAAAATGGTGAAGATACTGTTTCACAGCTTCAAATCACCACTTCTTACTCAAAAGCTGTCAATGTCAATCAAACTCCAAATACTTCCTTTGGTAATCCCCT
AAACAGTATTTTAATAGTGAAATTTGATGAAAGAAACTATTCTCTATGGCGCAGCATGGTTCTAACCGTTCTGAAAGGTAAAAAGGTTGATGGTTTTGTTCTTGAAACCA
AACCAAAACCTGCTGAATATGTTACAACAACAAAGGAGAAAATTCAAAAAACACAGAATTACTTAGCAACTCGGAATTTGAAGAATGGAACACTGTTGACCAAGCTTTAC
TTGGTTGGTTGTCGGGCTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATGAAAATGGTGAAGATACTGTTTCACAGCTTCAAATCACCACTTCTTACTCAAAAGCTGTCAATGTCAATCAAACTCCAAATACTTCCTTTGGTAATCCCCT
AAACAGTATTTTAATAGTGAAATTTGATGAAAGAAACTATTCTCTATGGCGCAGCATGGTTCTAACCGTTCTGAAAGGTAAAAAGGTTGATGGTTTTGTTCTTGAAACCA
AACCAAAACCTGCTGAATATGTTACAACAACAAAGGAGAAAATTCAAAAAACACAGAATTACTTAGCAACTCGGAATTTGAAGAATGGAACACTGTTGACCAAGCTTTAC
TTGGTTGGTTGTCGGGCTCAATGA
Protein sequenceShow/hide protein sequence
MENENGEDTVSQLQITTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQKTQNYLATRNLKNGTLLTKLY
LVGCRAQ