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PI0022408 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022408
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:19664972..19665985
RNA-Seq ExpressionPI0022408
SyntenyPI0022408
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.8e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E  N++RKYDPHGNTYN GWRDNPNLRWGND Q+  Q+ S+S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT AISK++GKGKL AQ ++AN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E  N+++KYDPHGNTYN GWRDNPNLRWGND Q+  Q+  +S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT  ISK++GKGKLLAQPDHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-5271.74Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQ   +KV KCGVCGL+GHPNDKCP+++E  N++R+YDP+GNTYN GWRDNPNLRWGND Q+  Q+  +S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT AISK++GKGKLLAQ DHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E  N++R+YDPHGNTYN+GWRD PNLRWGND Q   Q+ S+S NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT AISK++GKGKL AQPDHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.3e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E  N+++KYDPHGNTYN GWRDNPNLRWGND Q+  Q+  +S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT  ISK++GKGKLLAQPDHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.1e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E  N+++KYDPHGNTYN GWRDNPNLRWGND Q+  Q+  +S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT  ISK++GKGKLLAQPDHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

A0A5A7UID2 Retrotransposon gag protein1.2e-5271.74Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQ   +KV KCGVCGL+GHPNDKCP+++E  N++R+YDP+GNTYN GWRDNPNLRWGND Q+  Q+  +S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT AISK++GKGKLLAQ DHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

A0A5D3CFE7 Retrotransposon gag protein1.5e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E  N++R+YDPHGNTYN+GWRD PNLRWGND Q   Q+ S+S NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT AISK++GKGKL AQPDHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

A0A5D3CRR8 Retrotransposon gag protein4.2e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E  N++RKYDPHGNTYN GWRDNPNLRWGND Q+  Q+ S+S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT AISK++GKGKL AQ ++AN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

A0A5D3DCG3 Retrotransposon gag protein1.1e-5372.46Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E  N+++KYDPHGNTYN GWRDNPNLRWGND Q+  Q+  +S NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR
         EMKQQM+QLT  ISK++GKGKLLAQPDHAN+   SLR
Subjt:  NEMKQQMSQLTNAISKLEGKGKLLAQPDHANILKYSLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTATGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AAAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGTCGGTTGGAGGGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAT
CAACGTCATCCTCAAAAAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCTCAATTA
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCTAGCTCAGCCCGATCACGCGAATATATTAAAATATTCCCTTCGCGGCAAAACTGCTTCAGAATGCGTAGC
TCATCGCAGACTGCCTGCTTCGCGAGGCAAGTCCTTCATAACTAGAGCTCCGCGAAATACTTCATTCTGCAGAAGTATACCTCCCTTGCCGCATAACATAATTCGTTCGC
CAGCTCACCAAATCAAGCTCCTACCTAAACGCATGCAACCTCCATCAGCTCGCATCCAGCTCGCAGAATGCATCTCACTTGTTCAACTCACAACCTTCAGCCCGCCTAAA
AACGGTTACCTCAACCGTTCAAGCCCAAGCCCACGGTCCAAGCCCATTGTAACAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTATGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AAAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGTCGGTTGGAGGGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAT
CAACGTCATCCTCAAAAAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCTCAATTA
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCTAGCTCAGCCCGATCACGCGAATATATTAAAATATTCCCTTCGCGGCAAAACTGCTTCAGAATGCGTAGC
TCATCGCAGACTGCCTGCTTCGCGAGGCAAGTCCTTCATAACTAGAGCTCCGCGAAATACTTCATTCTGCAGAAGTATACCTCCCTTGCCGCATAACATAATTCGTTCGC
CAGCTCACCAAATCAAGCTCCTACCTAAACGCATGCAACCTCCATCAGCTCGCATCCAGCTCGCAGAATGCATCTCACTTGTTCAACTCACAACCTTCAGCCCGCCTAAA
AACGGTTACCTCAACCGTTCAAGCCCAAGCCCACGGTCCAAGCCCATTGTAACAAAATAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEKANVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQSTSSSKNQGSNLEDLVKALATNTISFQNEMKQQMSQL
TNAISKLEGKGKLLAQPDHANILKYSLRGKTASECVAHRRLPASRGKSFITRAPRNTSFCRSIPPLPHNIIRSPAHQIKLLPKRMQPPSARIQLAECISLVQLTTFSPPK
NGYLNRSSPSPRSKPIVTK