CuGenDBv2

Gene ID	PI0022452
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr11:12581148..12581447
RNA-Seq Expression	PI0022452
Synteny	PI0022452
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035532.1 uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]

3.0e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

3.0e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]

7.9e-40

85.86

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAPTGGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

TYK18566.1 uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa]

3.0e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

TYK31693.1 uncharacterized protein E5676_scaffold398G00590 [Cucumis melo var. makuwa]

2.3e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A LNVVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFR TNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UIP7 Reverse transcriptase

3.8e-40

85.86

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAPTGGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

A0A5A7UXR6 Reverse transcriptase

1.4e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

A0A5D3BRZ6 Reverse transcriptase

1.4e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

A0A5D3C4R1 Reverse transcriptase

1.4e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A L+VVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFRATNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

A0A5D3E6I8 Uncharacterized protein

1.1e-39

84.85

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Query:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW
        MSEDF A LNVVRNEIADV  R++LTMRAMANQAP GGAI V+RVKIPEPKPFCG RDAKALEN+IFDLEQYFR TNTV +EAKVTLATMHL+EDAKLW
Subjt:  MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCAGAGGATTTTCATGCCGCTCTTAACGTTGTCAGGAATGAGATCGCAGACGTGAGAACGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTGG
AGGAGCTATACAAGTTAACAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGAAAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATATTTTC
GGGCCACAAACACTGTTGCGAAGGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCGGAGGATGCAAAGTTGTGGTAG

mRNA sequence

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Protein sequence

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MSEDFHAALNVVRNEIADVRTRVNLTMRAMANQAPTGGAIQVNRVKIPEPKPFCGERDAKALENFIFDLEQYFRATNTVAKEAKVTLATMHLAEDAKLW

PI0022452 (gene) of Melon (PI 482460) v1 genome