; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0022479 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022479
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr01:12937267..12939790
RNA-Seq ExpressionPI0022479
SyntenyPI0022479
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.0e-5879.35Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+ IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN
        KKVNML+K VEERDYEIA LKNHIESRDA ESSH +T+KN +KGKA++QE   QN
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.4e-5778.85Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN  +DEHNS S+RS+EE+P P+IMSVMVTDVDTSEDR+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN
        KKVNML+KAVEERD+EIA LKNHIESRDA ESSH++TIKN NKGKAI+QE   QN+
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.6e-1833.48Show/hide
Query:  KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYIPLSRHKKGESPFAE--------------------------
        KGT+K EQ  IT+KKS++ DALN ++N ELT + K   P  E+I   ++  S PP+LRYIPLSR KKGESPF E                          
Subjt:  KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYIPLSRHKKGESPFAE--------------------------

Query:  ----------------------------------------------------------------------------GVGYKFSEPIRITGKGKVKVADTF
                                                                                    G+GY+ SEP+RITGKGK KVA+T 
Subjt:  ----------------------------------------------------------------------------GVGYKFSEPIRITGKGKVKVADTF

Query:  HITIEESNDSTEDEQSKSQRSSVF
        HIT+EES DS E ++ +SQRSSVF
Subjt:  HITIEESNDSTEDEQSKSQRSSVF

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.1e-0644.86Show/hide
Query:  LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQRTITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIP
        LQNND R    KEEEKQV + +EGWTLVT RKK KQ+FS+KES +YR Y+ KG     QR  T K   +    ++   G       I +K   P N    
Subjt:  LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQRTITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIP

Query:  IPKEIAS
         P EI S
Subjt:  IPKEIAS

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.4e-5774.7Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN  IDEHNS S+RS+EE+P P+IMS+MVTDVDTSEDR+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE
        KKVNML+K VEERD+EIA LKNHIESRDA ESSH++TIKN NKGKAI+QE   QN+     +S E+
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-5880.13Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSR+ QSSEDMP FE ANNIWEQ+SKPPKG I+IKEN  IDEHNS S+RS+EE P P+IMSVMVTDVDTSEDR+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN
        KKVNML+KAVEERD+EIASLKNHIESRDA+ESSH++ IKN NKGKAI+QE   QN+
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN

TYK14887.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.0e-5879.35Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+ IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN
        KKVNML+K VEERDYEIA LKNHIESRDA ESSH +T+KN +KGKA++QE   QN
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN

TrEMBL top hitse value%identityAlignment
A0A5A7T892 Ty3-gypsy retrotransposon protein3.9e-5879.35Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+ IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN
        KKVNML+K VEERDYEIA LKNHIESRDA ESSH +T+KN +KGKA++QE   QN
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN

A0A5A7TZU9 Ribonuclease H6.6e-5878.85Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN  +DEHNS S+RS+EE+P P+IMSVMVTDVDTSEDR+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN
        KKVNML+KAVEERD+EIA LKNHIESRDA ESSH++TIKN NKGKAI+QE   QN+
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN

A0A5A7TZU9 Ribonuclease H7.9e-1933.48Show/hide
Query:  KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYIPLSRHKKGESPFAE--------------------------
        KGT+K EQ  IT+KKS++ DALN ++N ELT + K   P  E+I   ++  S PP+LRYIPLSR KKGESPF E                          
Subjt:  KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYIPLSRHKKGESPFAE--------------------------

Query:  ----------------------------------------------------------------------------GVGYKFSEPIRITGKGKVKVADTF
                                                                                    G+GY+ SEP+RITGKGK KVA+T 
Subjt:  ----------------------------------------------------------------------------GVGYKFSEPIRITGKGKVKVADTF

Query:  HITIEESNDSTEDEQSKSQRSSVF
        HIT+EES DS E ++ +SQRSSVF
Subjt:  HITIEESNDSTEDEQSKSQRSSVF

A0A5A7TZU9 Ribonuclease H5.3e-0744.86Show/hide
Query:  LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQRTITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIP
        LQNND R    KEEEKQV + +EGWTLVT RKK KQ+FS+KES +YR Y+ KG     QR  T K   +    ++   G       I +K   P N    
Subjt:  LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQRTITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIP

Query:  IPKEIAS
         P EI S
Subjt:  IPKEIAS

A0A5A7TZU9 Ribonuclease H6.6e-5874.7Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN  IDEHNS S+RS+EE+P P+IMS+MVTDVDTSEDR+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE
        KKVNML+K VEERD+EIA LKNHIESRDA ESSH++TIKN NKGKAI+QE   QN+     +S E+
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE

A0A5A7U9H0 Ty3-gypsy retrotransposon protein6.0e-5980.13Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSR+ QSSEDMP FE ANNIWEQ+SKPPKG I+IKEN  IDEHNS S+RS+EE P P+IMSVMVTDVDTSEDR+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN
        KKVNML+KAVEERD+EIASLKNHIESRDA+ESSH++ IKN NKGKAI+QE   QN+
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN

A0A5D3CSH0 Ty3-gypsy retrotransposon protein3.9e-5879.35Show/hide
Query:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE
        MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+ IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELE
Subjt:  MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELE

Query:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN
        KKVNML+K VEERDYEIA LKNHIESRDA ESSH +T+KN +KGKA++QE   QN
Subjt:  KKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGA
GTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTG
AAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTT
GAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAAT
TTTGCAAGAAAAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAA
AGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAAT
GAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACC
TCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAA
AAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTC
TTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGA
GTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTG
AAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTT
GAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAAT
TTTGCAAGAAAAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAA
AGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAAT
GAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACC
TCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAA
AAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTC
TTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG
Protein sequenceShow/hide protein sequence
MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAV
EERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQRTITTKKSN
EVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYIPLSRHKKGESPFAEGVGYKFSEPIRITGKGKVKVADTFHITIEESNDSTEDEQSKSQRSSVFLSHHL
FYCTPFSFSEIKHNFGYKNVCLQKVKRVDDKD