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PI0022494 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022494
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:13865914..13867193
RNA-Seq ExpressionPI0022494
SyntenyPI0022494
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047513.1 hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]4.8e-2250.72Show/hide
Query:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------
        MMSMPQPLFAEYSVDRNHIS VSL PLHNALV+ ETFA LNI ++E+QNKIFLTF+ S                                          
Subjt:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------

Query:  ------------ILITSFGSKVTFSVLPFAETPLTEEV
                    ILIT+FGSKVTFSV PFAETPLTEE+
Subjt:  ------------ILITSFGSKVTFSVLPFAETPLTEEV

KGN45637.1 hypothetical protein Csa_005027 [Cucumis sativus]4.7e-2557.94Show/hide
Query:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI
        MF IKID +DP LDA  LF ++ + +ICLKF  ST SI  RY+ P FFAM+ +P+PLFAEY V R+HI RVSLL LH AL   +T+++L I+LQE+QN I
Subjt:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI

Query:  FLTFDPS
         L F+PS
Subjt:  FLTFDPS

KGN61523.1 hypothetical protein Csa_006491 [Cucumis sativus]5.3e-3757.97Show/hide
Query:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI
        MF IK+D++DPFLDAT LF E  + EICLKF PST S+  RY+ P FFAM+ MP PLF EYSVDRNHISR+SL    NAL+E +++++++I+L+E QN I
Subjt:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI

Query:  FLTFDPSILITSFGSKVTFSVLPFAETPLTEEVCSMNF
           F+PSILITS GS++TFS +P  E  + EEVC + F
Subjt:  FLTFDPSILITSFGSKVTFSVLPFAETPLTEEVCSMNF

TYK26483.1 hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]1.1e-2151.09Show/hide
Query:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------
        MMSMPQPLFAEYSVDRNHIS VSL PLHNALV+ ETFA LNI ++E+QNKIFLTF+ S                                          
Subjt:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------

Query:  ------------ILITSFGSKVTFSVLPFAETPLTEE
                    ILIT+FGSKVTFSV PFAETPLTEE
Subjt:  ------------ILITSFGSKVTFSVLPFAETPLTEE

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]2.4e-4557.53Show/hide
Query:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI
        MF IKIDDIDPFLDATILFAELTH EICLKFLPST+SI VRY+ P+FF  MS+PQPLF EYSVDRNHISR+SLL  ++AL+E +TFAALNI+LQEDQNKI
Subjt:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI

Query:  FLTFDPS------------------------------------------------------ILITSFGSKVTFSVLPFAETPLTEE
         LTF+PS                                                      ILI SFGSKV+FS+LPFAETPLTEE
Subjt:  FLTFDPS------------------------------------------------------ILITSFGSKVTFSVLPFAETPLTEE

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein1.3e-1238.1Show/hide
Query:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI
        MF +K+ + DP LDAT  FA+++  +  +KF PS   I   ++SP F A + +    F  +SVD +H S+VSL   H+A+++  +FA++ I+L +  N+I
Subjt:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI

Query:  FLTFD
         L FD
Subjt:  FLTFD

A0A0A0KB76 Uncharacterized protein2.3e-2557.94Show/hide
Query:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI
        MF IKID +DP LDA  LF ++ + +ICLKF  ST SI  RY+ P FFAM+ +P+PLFAEY V R+HI RVSLL LH AL   +T+++L I+LQE+QN I
Subjt:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI

Query:  FLTFDPS
         L F+PS
Subjt:  FLTFDPS

A0A0A0LIE0 Uncharacterized protein2.6e-3757.97Show/hide
Query:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI
        MF IK+D++DPFLDAT LF E  + EICLKF PST S+  RY+ P FFAM+ MP PLF EYSVDRNHISR+SL    NAL+E +++++++I+L+E QN I
Subjt:  MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKI

Query:  FLTFDPSILITSFGSKVTFSVLPFAETPLTEEVCSMNF
           F+PSILITS GS++TFS +P  E  + EEVC + F
Subjt:  FLTFDPSILITSFGSKVTFSVLPFAETPLTEEVCSMNF

A0A5A7TVD7 Uncharacterized protein2.3e-2250.72Show/hide
Query:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------
        MMSMPQPLFAEYSVDRNHIS VSL PLHNALV+ ETFA LNI ++E+QNKIFLTF+ S                                          
Subjt:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------

Query:  ------------ILITSFGSKVTFSVLPFAETPLTEEV
                    ILIT+FGSKVTFSV PFAETPLTEE+
Subjt:  ------------ILITSFGSKVTFSVLPFAETPLTEEV

A0A5D3DSC2 Uncharacterized protein5.2e-2251.09Show/hide
Query:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------
        MMSMPQPLFAEYSVDRNHIS VSL PLHNALV+ ETFA LNI ++E+QNKIFLTF+ S                                          
Subjt:  MMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPS------------------------------------------

Query:  ------------ILITSFGSKVTFSVLPFAETPLTEE
                    ILIT+FGSKVTFSV PFAETPLTEE
Subjt:  ------------ILITSFGSKVTFSVLPFAETPLTEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTGTATCAAGATTGATGACATTGATCCTTTCCTAGATGCAACCATCCTATTTGCTGAACTTACACACCATGAAATCTGCCTTAAATTCTTGCCGTCAACGTTGTC
GATAACTGTTCGGTACAAAAGCCCTCTTTTCTTTGCAATGATGTCTATGCCGCAACCGTTGTTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAAGGGTTTCCCTCC
TGCCCTTGCACAATGCTTTGGTTGAAGCAGAAACTTTTGCTGCATTGAACATCTATCTTCAGGAAGACCAGAATAAAATATTTCTTACATTTGATCCTTCAATTTTGATT
ACTTCATTTGGTTCAAAAGTTACCTTCTCAGTTCTTCCATTTGCAGAGACACCTCTTACTGAAGAGGTATGTTCTATGAACTTTTATTTAAAAGGGTTATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTGTATCAAGATTGATGACATTGATCCTTTCCTAGATGCAACCATCCTATTTGCTGAACTTACACACCATGAAATCTGCCTTAAATTCTTGCCGTCAACGTTGTC
GATAACTGTTCGGTACAAAAGCCCTCTTTTCTTTGCAATGATGTCTATGCCGCAACCGTTGTTCGCCGAGTATTCCGTTGATCGGAATCACATTTCAAGGGTTTCCCTCC
TGCCCTTGCACAATGCTTTGGTTGAAGCAGAAACTTTTGCTGCATTGAACATCTATCTTCAGGAAGACCAGAATAAAATATTTCTTACATTTGATCCTTCAATTTTGATT
ACTTCATTTGGTTCAAAAGTTACCTTCTCAGTTCTTCCATTTGCAGAGACACCTCTTACTGAAGAGGTATGTTCTATGAACTTTTATTTAAAAGGGTTATTTTAA
Protein sequenceShow/hide protein sequence
MFCIKIDDIDPFLDATILFAELTHHEICLKFLPSTLSITVRYKSPLFFAMMSMPQPLFAEYSVDRNHISRVSLLPLHNALVEAETFAALNIYLQEDQNKIFLTFDPSILI
TSFGSKVTFSVLPFAETPLTEEVCSMNFYLKGLF