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PI0022504 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022504
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr03:13817952..13818665
RNA-Seq ExpressionPI0022504
SyntenyPI0022504
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]4.9e-2348.85Show/hide
Query:  SSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEK-------------------------VSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNT
        SSYNQI  TLD++A NNEEWD+D F + RGG G++E+                           QVNAA  S  +  Q+DE+GC+    PH  DACPLN 
Subjt:  SSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEK-------------------------VSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNT

Query:  ETVAFVRNDPFSNTYNPGWRNHPNFERGGTG
        E VA+V++DP+SNTYNP WRNHPNF  G TG
Subjt:  ETVAFVRNDPFSNTYNPGWRNHPNFERGGTG

KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]4.6e-2140.69Show/hide
Query:  MLKSSYNQIKATLDTMANNNEEWDEDDF-------GNCRGGCGR------------------SEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACP
        ML+SSY QIK TLD + NN++E  +DD        G    G  R                  S  +SQV+A G  V A  Q+DEM  VGC  PH TDAC 
Subjt:  MLKSSYNQIKATLDTMANNNEEWDEDDF-------GNCRGGCGR------------------SEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACP

Query:  LNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYRGEAFGSHARYHNNRPQHSQHQ-QQPTTTTPSTSSSMENLLREYMQKNNALLQ
        LN E  A+V++ P+SNTYN                         G+YRGEA   H + H +RP +S  Q QQ TT TPS+ SSM  LLR+YMQ+ +A +Q
Subjt:  LNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYRGEAFGSHARYHNNRPQHSQHQ-QQPTTTTPSTSSSMENLLREYMQKNNALLQ

Query:  SQAS
        SQ +
Subjt:  SQAS

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]2.1e-1841.91Show/hide
Query:  FWLEQGDTIDSHAVFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGN------CRGGCGRSE------------------------KVSQVNAAGGSVH
        F L +     ++ VF GGML+SSYNQIK  LDTMA+N++EW ++ FG+       +G  GR E                         + QVN    SV 
Subjt:  FWLEQGDTIDSHAVFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGN------CRGGCGRSE------------------------KVSQVNAAGGSVH

Query:  AANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDP
           Q++EMGCVGC  PH+T+ACPLNTE VA+++NDP
Subjt:  AANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDP

KAA0058408.1 uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa]5.6e-1954.02Show/hide
Query:  RSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYR
        +S  ++QVN    SVH    + EM CVGC G ++TD CP NT+ + + +NDP+SNTYN GWRNH NF  GGTGQ NQGR+  Q  YR
Subjt:  RSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYR

KGN57762.1 hypothetical protein Csa_009532 [Cucumis sativus]4.3e-1947.86Show/hide
Query:  VFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNP
        VF GGML SSYN IK TL+ M +N++EW +D+FG+      R+E +       GS     +IDE G  G   PHD DACP++ ET+A+V++DP+SN YN 
Subjt:  VFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNP

Query:  GWRNHPNFERGGTGQQN
        GWR+H NF  GG  Q +
Subjt:  GWRNHPNFERGGTGQQN

TrEMBL top hitse value%identityAlignment
A0A0A0LAQ9 Uncharacterized protein2.1e-1947.86Show/hide
Query:  VFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNP
        VF GGML SSYN IK TL+ M +N++EW +D+FG+      R+E +       GS     +IDE G  G   PHD DACP++ ET+A+V++DP+SN YN 
Subjt:  VFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNP

Query:  GWRNHPNFERGGTGQQN
        GWR+H NF  GG  Q +
Subjt:  GWRNHPNFERGGTGQQN

A0A5A7UTC1 Uncharacterized protein2.7e-1954.02Show/hide
Query:  RSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYR
        +S  ++QVN    SVH    + EM CVGC G ++TD CP NT+ + + +NDP+SNTYN GWRNH NF  GGTGQ NQGR+  Q  YR
Subjt:  RSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYR

A0A5D3CC26 Uncharacterized protein1.0e-1841.91Show/hide
Query:  FWLEQGDTIDSHAVFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGN------CRGGCGRSE------------------------KVSQVNAAGGSVH
        F L +     ++ VF GGML+SSYNQIK  LDTMA+N++EW ++ FG+       +G  GR E                         + QVN    SV 
Subjt:  FWLEQGDTIDSHAVFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGN------CRGGCGRSE------------------------KVSQVNAAGGSVH

Query:  AANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDP
           Q++EMGCVGC  PH+T+ACPLNTE VA+++NDP
Subjt:  AANQIDEMGCVGCDGPHDTDACPLNTETVAFVRNDP

A0A5D3CSC7 Uncharacterized protein2.4e-2348.85Show/hide
Query:  SSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEK-------------------------VSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNT
        SSYNQI  TLD++A NNEEWD+D F + RGG G++E+                           QVNAA  S  +  Q+DE+GC+    PH  DACPLN 
Subjt:  SSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEK-------------------------VSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPLNT

Query:  ETVAFVRNDPFSNTYNPGWRNHPNFERGGTG
        E VA+V++DP+SNTYNP WRNHPNF  G TG
Subjt:  ETVAFVRNDPFSNTYNPGWRNHPNFERGGTG

A0A5D3D2S0 Uncharacterized protein2.2e-2140.69Show/hide
Query:  MLKSSYNQIKATLDTMANNNEEWDEDDF-------GNCRGGCGR------------------SEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACP
        ML+SSY QIK TLD + NN++E  +DD        G    G  R                  S  +SQV+A G  V A  Q+DEM  VGC  PH TDAC 
Subjt:  MLKSSYNQIKATLDTMANNNEEWDEDDF-------GNCRGGCGR------------------SEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACP

Query:  LNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYRGEAFGSHARYHNNRPQHSQHQ-QQPTTTTPSTSSSMENLLREYMQKNNALLQ
        LN E  A+V++ P+SNTYN                         G+YRGEA   H + H +RP +S  Q QQ TT TPS+ SSM  LLR+YMQ+ +A +Q
Subjt:  LNTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYRGEAFGSHARYHNNRPQHSQHQ-QQPTTTTPSTSSSMENLLREYMQKNNALLQ

Query:  SQAS
        SQ +
Subjt:  SQAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCACAATGGCATTCCCGAATGTATATTGATGGAGGTCTTCTATTTTGGCTTGAACAAGGCGACACAATAGACTCTCATGCTGTGTTTGTAGGTGGTATGTTGAA
AAGCTCCTACAACCAGATTAAGGCAACACTGGACACGATGGCCAACAATAATGAAGAATGGGATGAAGATGATTTCGGCAATTGCCGAGGAGGATGCGGAAGAAGCGAAA
AAGTATCGCAAGTCAATGCCGCAGGAGGCTCTGTGCACGCGGCAAATCAAATTGATGAAATGGGATGTGTGGGATGCGACGGTCCTCATGATACTGACGCATGCCCACTC
AATACAGAAACAGTCGCGTTCGTAAGGAACGACCCTTTCTCCAACACTTACAACCCTGGTTGGAGGAACCATCCTAACTTTGAAAGGGGAGGAACGGGTCAACAAAATCA
AGGGCGACGTCTTGGTCAAGGTGACTATCGCGGGGAAGCATTTGGCTCCCATGCCAGGTACCACAACAACAGACCCCAACACTCCCAACATCAACAACAACCCACCACCA
CTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGTGAATACATGCAGAAAAATAATGCCCTTCTGCAAAGCCAAGCTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCACAATGGCATTCCCGAATGTATATTGATGGAGGTCTTCTATTTTGGCTTGAACAAGGCGACACAATAGACTCTCATGCTGTGTTTGTAGGTGGTATGTTGAA
AAGCTCCTACAACCAGATTAAGGCAACACTGGACACGATGGCCAACAATAATGAAGAATGGGATGAAGATGATTTCGGCAATTGCCGAGGAGGATGCGGAAGAAGCGAAA
AAGTATCGCAAGTCAATGCCGCAGGAGGCTCTGTGCACGCGGCAAATCAAATTGATGAAATGGGATGTGTGGGATGCGACGGTCCTCATGATACTGACGCATGCCCACTC
AATACAGAAACAGTCGCGTTCGTAAGGAACGACCCTTTCTCCAACACTTACAACCCTGGTTGGAGGAACCATCCTAACTTTGAAAGGGGAGGAACGGGTCAACAAAATCA
AGGGCGACGTCTTGGTCAAGGTGACTATCGCGGGGAAGCATTTGGCTCCCATGCCAGGTACCACAACAACAGACCCCAACACTCCCAACATCAACAACAACCCACCACCA
CTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGTGAATACATGCAGAAAAATAATGCCCTTCTGCAAAGCCAAGCTTCATAA
Protein sequenceShow/hide protein sequence
MPPQWHSRMYIDGGLLFWLEQGDTIDSHAVFVGGMLKSSYNQIKATLDTMANNNEEWDEDDFGNCRGGCGRSEKVSQVNAAGGSVHAANQIDEMGCVGCDGPHDTDACPL
NTETVAFVRNDPFSNTYNPGWRNHPNFERGGTGQQNQGRRLGQGDYRGEAFGSHARYHNNRPQHSQHQQQPTTTTPSTSSSMENLLREYMQKNNALLQSQAS