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PI0022522 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022522
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:17337565..17338338
RNA-Seq ExpressionPI0022522
SyntenyPI0022522
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.4e-5673.65Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSG + QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP

Query:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTR
        PTTYSQA+  +KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT++E VSKIFP+ FNFLPEDL+K +
Subjt:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]1.1e-5674.55Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++R S I I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP

Query:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRK
        PTTYSQA+  +KRF+PRP+IK YFQK +V+YDP IELEYQSLT++E VSKIFPE FNFLPEDLRK
Subjt:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.4e-6477.53Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS  I I SPTESSTPPRPS NL+RPS  + QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP

Query:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQA+  +KRF+PRPEIK+YFQK +V+YDPIIELEYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]1.3e-4976.64Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTPPTTYSQAIASEKRFIPRPEIKTYFQKQVVIYD
        MSADQYAMDLGFTTVTRS++RSS IRIES TESSTPPRPSANL+RP G   QMRPPASP SN ESSTPPTTYSQ +  +KRF+PRPEIK+YFQK +V+YD
Subjt:  MSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTPPTTYSQAIASEKRFIPRPEIKTYFQKQVVIYD

Query:  PIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKF
         IIE EYQS+T+++TVSKIF + FN LPEDLRKTR F
Subjt:  PIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]4.5e-5577.12Show/hide
Query:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTPPTTYSQAIAS
        R +STSS+G+RPSSS N APSPMSADQYAMDLGFTTVTRS+ARSS I+I SPT+SSTPPR SANL+RPS E+ QMRP ASPLSN ESSTPPTTYSQ I  
Subjt:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTPPTTYSQAIAS

Query:  EKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDL
        +KRF+PR EIK+YFQK V++YD IIE EYQSLT++ETVSKIFP+ FNFLP+DL
Subjt:  EKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDL

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein1.2e-6477.53Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS  I I SPTESSTPPRPS NL+RPS  + QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP

Query:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQA+  +KRF+PRPEIK+YFQK +V+YDPIIELEYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK

A0A5D3BM67 Uncharacterized protein6.2e-5076.64Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTPPTTYSQAIASEKRFIPRPEIKTYFQKQVVIYD
        MSADQYAMDLGFTTVTRS++RSS IRIES TESSTPPRPSANL+RP G   QMRPPASP SN ESSTPPTTYSQ +  +KRF+PRPEIK+YFQK +V+YD
Subjt:  MSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTPPTTYSQAIASEKRFIPRPEIKTYFQKQVVIYD

Query:  PIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKF
         IIE EYQS+T+++TVSKIF + FN LPEDLRKTR F
Subjt:  PIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKF

A0A5D3DX32 Retrotransposable element Tf24.0e-4950Show/hide
Query:  SSTSSKGSRPS----SSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESST-PPRPSANLVRPSGEITQMRPPASP-LSNLESSTP--PTTY
        S  SS G+ PS     SQ+ APSPMSA+ YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T  +  ASP  S+  S+ P  P++Y
Subjt:  SSTSSKGSRPS----SSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESST-PPRPSANLVRPSGEITQMRPPASP-LSNLESSTP--PTTY

Query:  SQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDSSKIAYSKLKIFKA
        SQ I   K F PRP I  YF K  ++ D  IE E+   ++ E  S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ 
Subjt:  SQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDSSKIAYSKLKIFKA

Query:  INPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRKYY
        + P++W QG+F  + FS  F   SY+Y+DY KAW+ V W  +  ++
Subjt:  INPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRKYY

A0A5D3E4J4 Uncharacterized protein5.2e-5774.55Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++R S I I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP

Query:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRK
        PTTYSQA+  +KRF+PRP+IK YFQK +V+YDP IELEYQSLT++E VSKIFPE FNFLPEDLRK
Subjt:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRK

E5GCE6 Uncharacterized protein6.8e-5773.65Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSG + QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTP

Query:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTR
        PTTYSQA+  +KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT++E VSKIFP+ FNFLPEDL+K +
Subjt:  PTTYSQAIASEKRFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCCATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGACATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGAAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCATTGCATCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACTAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAACGATTCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAA
CCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAAATATTACTGTTGTGCTTCACATTCTACACTATG
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCCATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGACATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGAAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCATTGCATCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACTAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAACGATTCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAA
CCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAAATATTACTGTTGTGCTTCACATTCTACACTATG
TTAA
Protein sequenceShow/hide protein sequence
MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGEITQMRPPASPLSNLESSTPPTTYSQAIASEK
RFIPRPEIKTYFQKQVVIYDPIIELEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDSSKIAYSKLKIFKAINPTHWNQGIFTEKSFSK
PFVPQSYSYQDYIKAWFRVVWYSSRKYYCCASHSTLC