; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0022551 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022551
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionCST complex subunit STN1
Genome locationchr05:19305455..19306084
RNA-Seq ExpressionPI0022551
SyntenyPI0022551
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057432.1 CST complex subunit STN1 [Cucumis melo var. makuwa]1.9e-8796.43Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACV CILWLNHLTS YF+SRHHPDVRI+
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSPIPT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT

KAG6571457.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]5.7e-7680.9Show/hide
Query:  KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ----NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYF
        +L  RFPMNQ++  +FSLY TH+KLLGFDLNSL Q    +SSSD+VSFSR+GYAVSC EIVGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTSPYF
Subjt:  KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ----NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYF

Query:  SSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIP
        + RH PDVRI+G+MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD MRLA+KCYDLSP P
Subjt:  SSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIP

XP_004145384.1 CST complex subunit STN1 [Cucumis sativus]8.8e-8594.05Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACV CILWLNHLTS YF+SRHH DVRI+
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT
        GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSP PT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT

XP_008449339.1 PREDICTED: CST complex subunit STN1 [Cucumis melo]9.4e-9587.32Show/hide
Query:  MGLSMNFNWAL-------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRF
        MGL MNFNWAL                   KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRF
Subjt:  MGLSMNFNWAL-------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRF

Query:  LKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDL
        LKFSVDDGTACV CILWLNHLTS YF+SRHHPDVRI+ DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL
Subjt:  LKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDL

Query:  SPIPT
        SPIPT
Subjt:  SPIPT

XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]5.5e-7972.86Show/hide
Query:  MGLSMNFNWAL----------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD
        MGLS+NFNWAL                      +L  RFPMNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRD
Subjt:  MGLSMNFNWAL----------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD

Query:  LKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA
        LKPNRFL+FSVDDGT CV CILWLNHLTSPYF+SRH PDVRI+G+MATHFAAQIRVGIV RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MRLA
Subjt:  LKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA

Query:  IKCYDLSPIP
        +KCYDLSP P
Subjt:  IKCYDLSPIP

TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein4.3e-8594.05Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACV CILWLNHLTS YF+SRHH DVRI+
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT
        GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSP PT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT

A0A1S3BLT5 CST complex subunit STN14.6e-9587.32Show/hide
Query:  MGLSMNFNWAL-------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRF
        MGL MNFNWAL                   KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRF
Subjt:  MGLSMNFNWAL-------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRF

Query:  LKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDL
        LKFSVDDGTACV CILWLNHLTS YF+SRHHPDVRI+ DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL
Subjt:  LKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDL

Query:  SPIPT
        SPIPT
Subjt:  SPIPT

A0A5D3E3H2 CST complex subunit STN19.2e-8896.43Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACV CILWLNHLTS YF+SRHHPDVRI+
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIM

Query:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSPIPT
Subjt:  GDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN12.7e-7972.86Show/hide
Query:  MGLSMNFNWAL----------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD
        MGLS+NFNWAL                      +L  RFPMNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRD
Subjt:  MGLSMNFNWAL----------------------KLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD

Query:  LKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA
        LKPNRFL+FSVDDGT CV CILWLNHLTSPYF+SRH PDVRI+G+MATHFAAQIRVGIV RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MRLA
Subjt:  LKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLA

Query:  IKCYDLSPIP
        +KCYDLSP P
Subjt:  IKCYDLSPIP

A0A6J1HUX0 CST complex subunit STN12.1e-6876.57Show/hide
Query:  MGLSMNFNWALKLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCIL
        MG  +N    ++   RFPMNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSVDDGT CV CIL
Subjt:  MGLSMNFNWALKLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCIL

Query:  WLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM
        WLNHLTSPYF+SRH PDVRI+G+MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Subjt:  WLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM

SwissProt top hitse value%identityAlignment
Q08DB2 CST complex subunit STN18.5e-0624.69Show/hide
Query:  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMG--------D
        ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD T  + CI W     +   S+   P  R +          
Subjt:  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMG--------D

Query:  MATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAIKCYD
              A++ +G ++RVRG +  +RG  +I  +     DDP  N +I   L+   +  K YD
Subjt:  MATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLDSMRLAIKCYD

Q9LMK5 CST complex subunit STN11.2e-3653.59Show/hide
Query:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFA
        SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTS YFS      + ++   A   A
Subjt:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCY
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCY

Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein8.6e-3853.59Show/hide
Query:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFA
        SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTS YFS      + ++   A   A
Subjt:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCY
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCY

AT2G24490.1 replicon protein A24.8e-0424.39Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R                  +R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD

AT2G24490.2 replicon protein A24.8e-0424.39Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R                  +R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSRHHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTATCTATGAACTTCAACTGGGCTCTCAAACTACACATTAGGTTTCCGATGAACCAACGGCAACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCT
TGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCAGTTTCCTGTACAGAGATCGTCGGTGTTGTGGTCTTCC
GTGACCTGAAACCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCCTGTGTTCGTTGTATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTTCTTCACGC
CATCACCCAGATGTTCGAATTATGGGAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAAT
GGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATAAAGTGTTATGACCTCTCCCCTA
TACCCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTATCTATGAACTTCAACTGGGCTCTCAAACTACACATTAGGTTTCCGATGAACCAACGGCAACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCT
TGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCAGTTTCCTGTACAGAGATCGTCGGTGTTGTGGTCTTCC
GTGACCTGAAACCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCCTGTGTTCGTTGTATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTTCTTCACGC
CATCACCCAGATGTTCGAATTATGGGAGATATGGCGACCCATTTCGCAGCCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAAT
GGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATAAAGTGTTATGACCTCTCCCCTA
TACCCACTTAG
Protein sequenceShow/hide protein sequence
MGLSMNFNWALKLHIRFPMNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVRCILWLNHLTSPYFSSR
HHPDVRIMGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAIKCYDLSPIPT