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PI0022591 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022591
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:19662597..19663376
RNA-Seq ExpressionPI0022591
SyntenyPI0022591
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-3141.77Show/hide
Query:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIHMVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLLHS
        W+ +SN W+L   + LRD E   W     SLP P        P+W LN N++F  ASVK+ I    P        N++K LWK   P+K KFF+W+L+H 
Subjt:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIHMVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLLHS

Query:  CINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS
        CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL ++S+
Subjt:  CINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.9e-3139.75Show/hide
Query:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL
        +W+ +   WN+   + LRD E+  W     SLP P        P+WKLN N++F  AS+KK++     +P + H    +++K LWK + P+K KFF+W+L
Subjt:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL

Query:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS
        +H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL ++S+
Subjt:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-3143.87Show/hide
Query:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL
        W+ +SN W+L   + LRD E+  W     SLP P        P+WKLN N++F  ASVKK +    V+P + H    N++K LWK   P+K KFF+W+L+
Subjt:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL

Query:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL
        H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL
Subjt:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.9e-3139.75Show/hide
Query:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL
        +W+ +   WN+   + LRD E+  W     SLP P        P+WKLN N++F  AS+KK++     +P + H    +++K LWK + P+K KFF+W+L
Subjt:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL

Query:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS
        +H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL ++S+
Subjt:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-3143.87Show/hide
Query:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL
        W+ +SN W+L   + LRD E+  W     SLP P        P+WKLN N++F  ASVKK +    V+P + H    N++K LWK   P+K KFF+W+L+
Subjt:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL

Query:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL
        H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL
Subjt:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein8.4e-3241.77Show/hide
Query:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIHMVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLLHS
        W+ +SN W+L   + LRD E   W     SLP P        P+W LN N++F  ASVK+ I    P        N++K LWK   P+K KFF+W+L+H 
Subjt:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIHMVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLLHS

Query:  CINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS
        CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL ++S+
Subjt:  CINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.9e-3139.75Show/hide
Query:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL
        +W+ +   WN+   + LRD E+  W     SLP P        P+WKLN N++F  AS+KK++     +P + H    +++K LWK + P+K KFF+W+L
Subjt:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL

Query:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS
        +H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL ++S+
Subjt:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.9e-3139.75Show/hide
Query:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL
        +W+ +   WN+   + LRD E+  W     SLP P        P+WKLN N++F  AS+KK++     +P + H    +++K LWK + P+K KFF+W+L
Subjt:  MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSL

Query:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS
        +H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL ++S+
Subjt:  LHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSS

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein1.1e-3143.87Show/hide
Query:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL
        W+ +SN W+L   + LRD E+  W     SLP P        P+WKLN N++F  ASVKK +    V+P + H    N++K LWK   P+K KFF+W+L+
Subjt:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL

Query:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL
        H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL
Subjt:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein1.1e-3143.87Show/hide
Query:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL
        W+ +SN W+L   + LRD E+  W     SLP P        P+WKLN N++F  ASVKK +    V+P + H    N++K LWK   P+K KFF+W+L+
Subjt:  WDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIH--MVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLL

Query:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL
        H CINT++ LQ+R PNW L+PN C +C  + EDI+HLF+ CP+ + +W     LL
Subjt:  HSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.0e-0528.81Show/hide
Query:  MWKLNLNSMFSIAS--------VKKNIHMVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLLHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHL
        +W  N    +++ S           NI  +NP   HG   ++   +W   I  K K FLW  L   + T+  L  R     ++P+ C  C    E I+H 
Subjt:  MWKLNLNSMFSIAS--------VKKNIHMVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLLHSCINTSNMLQRRWPNWNLNPNRCSLCKGNAEDIDHL

Query:  FVTCPFMKPIWQLVDMLL
          TCPF    W+L D  L
Subjt:  FVTCPFMKPIWQLVDMLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGATTCAAATTCAAATGCTTGGAATCTCAAACCGAGAAAATTGTTGAGAGACTTTGAAAGACAACAATGGGATGAGTTCTCTTTATCCCTTCCACATCCGAACAA
TAGAACAGAAAAAGATATTCCTATGTGGAAACTCAACTTAAACTCCATGTTCAGTATTGCCTCTGTCAAAAAAAATATTCATATGGTGAATCCTAGAGACGACCATGGGA
TTGAAAATAACATATTCAAAAACCTTTGGAAATCCAACATCCCTCAAAAAGGTAAATTCTTTCTTTGGTCTCTGCTTCATAGTTGCATTAATACATCTAACATGCTCCAA
AGGAGGTGGCCAAACTGGAATCTCAATCCCAACAGATGCTCTCTTTGCAAAGGCAATGCGGAGGACATTGATCACCTTTTTGTTACATGCCCTTTTATGAAACCTATATG
GCAGCTGGTGGATATGCTTTTGTACTTTAGCTCTTCTACTTGGGTTTTTTGGGCTTTTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGATTCAAATTCAAATGCTTGGAATCTCAAACCGAGAAAATTGTTGAGAGACTTTGAAAGACAACAATGGGATGAGTTCTCTTTATCCCTTCCACATCCGAACAA
TAGAACAGAAAAAGATATTCCTATGTGGAAACTCAACTTAAACTCCATGTTCAGTATTGCCTCTGTCAAAAAAAATATTCATATGGTGAATCCTAGAGACGACCATGGGA
TTGAAAATAACATATTCAAAAACCTTTGGAAATCCAACATCCCTCAAAAAGGTAAATTCTTTCTTTGGTCTCTGCTTCATAGTTGCATTAATACATCTAACATGCTCCAA
AGGAGGTGGCCAAACTGGAATCTCAATCCCAACAGATGCTCTCTTTGCAAAGGCAATGCGGAGGACATTGATCACCTTTTTGTTACATGCCCTTTTATGAAACCTATATG
GCAGCTGGTGGATATGCTTTTGTACTTTAGCTCTTCTACTTGGGTTTTTTGGGCTTTTCTCTAG
Protein sequenceShow/hide protein sequence
MWDSNSNAWNLKPRKLLRDFERQQWDEFSLSLPHPNNRTEKDIPMWKLNLNSMFSIASVKKNIHMVNPRDDHGIENNIFKNLWKSNIPQKGKFFLWSLLHSCINTSNMLQ
RRWPNWNLNPNRCSLCKGNAEDIDHLFVTCPFMKPIWQLVDMLLYFSSSTWVFWAFL