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PI0022607 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022607
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr10:13822130..13822399
RNA-Seq ExpressionPI0022607
SyntenyPI0022607
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABR67408.1 reverse transcriptase [Cucumis melo subsp. melo]4.6e-0641.86Show/hide
Query:  MDYLSRLISALEKK--------------------------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS
        MDYLSRLI  L  K                          D++DS+KNL+  I+LF+ A G+N+NLNKSTIS +N+ A+RT +VA+
Subjt:  MDYLSRLISALEKK--------------------------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS

KAA0037454.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0656.45Show/hide
Query:  MDYLSRLISALEKK-DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK
        MDYLSRL+  LE + D+D  I NLQ A+ LFE ASGL  N +KSTIS +N+ A+RTT +++K
Subjt:  MDYLSRLISALEKK-DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK

KAA0045522.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-0754.41Show/hide
Query:  MDYLSRLISALEKK--------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS
        MDYL+R++  LEKK        D+D+ IKNL++AI+L E AS LNINL+KS+IS INVD+++   VAS
Subjt:  MDYLSRLISALEKK--------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS

TYK05764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.1e-0765.96Show/hide
Query:  KDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS
        +D++DS+ NL+Y I LF+ A GLN+NLNKSTISSINVD  RT +VAS
Subjt:  KDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.0e-0654.39Show/hide
Query:  SRLISALEKKDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK
        S +I+   ++D + S++NL+  I LF+ ASGLNINLNKSTIS IN+DA RT ++AS+
Subjt:  SRLISALEKKDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK

TrEMBL top hitse value%identityAlignment
A0A5A7TQ88 LINE-1 retrotransposable element ORF2 protein9.0e-0854.41Show/hide
Query:  MDYLSRLISALEKK--------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS
        MDYL+R++  LEKK        D+D+ IKNL++AI+L E AS LNINL+KS+IS INVD+++   VAS
Subjt:  MDYLSRLISALEKK--------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS

A0A5D3BV09 LINE-1 retrotransposable element ORF2 protein5.8e-0756.45Show/hide
Query:  MDYLSRLISALEKK-DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK
        MDYLSRL+  LE + D+D  I NLQ A+ LFE ASGL  N +KSTIS +N+ A+RTT +++K
Subjt:  MDYLSRLISALEKK-DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK

A0A5D3C384 LINE-1 retrotransposable element ORF2 protein3.4e-0765.96Show/hide
Query:  KDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS
        +D++DS+ NL+Y I LF+ A GLN+NLNKSTISSINVD  RT +VAS
Subjt:  KDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein2.9e-0654.39Show/hide
Query:  SRLISALEKKDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK
        S +I+   ++D + S++NL+  I LF+ ASGLNINLNKSTIS IN+DA RT ++AS+
Subjt:  SRLISALEKKDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK

A6YTD8 Reverse transcriptase2.2e-0641.86Show/hide
Query:  MDYLSRLISALEKK--------------------------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS
        MDYLSRLI  L  K                          D++DS+KNL+  I+LF+ A G+N+NLNKSTIS +N+ A+RT +VA+
Subjt:  MDYLSRLISALEKK--------------------------DHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTATCTTAGCAGATTAATATCCGCCTTAGAGAAAAAGGACCATGATGACTCTATCAAAAATCTGCAATATGCTATTTATCTATTTGAATGTGCTTCAGGCCTCAA
CATCAACCTCAACAAATCTACGATCTCCTCTATCAATGTTGATGCTAATAGAACTACTGAAGTTGCTTCAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTATCTTAGCAGATTAATATCCGCCTTAGAGAAAAAGGACCATGATGACTCTATCAAAAATCTGCAATATGCTATTTATCTATTTGAATGTGCTTCAGGCCTCAA
CATCAACCTCAACAAATCTACGATCTCCTCTATCAATGTTGATGCTAATAGAACTACTGAAGTTGCTTCAAAATGA
Protein sequenceShow/hide protein sequence
MDYLSRLISALEKKDHDDSIKNLQYAIYLFECASGLNINLNKSTISSINVDANRTTEVASK