CuGenDBv2

Gene ID	PI0022624
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr08:4927408..4927854
RNA-Seq Expression	PI0022624
Synteny	PI0022624
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.2e-57

80.41

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP IDEH S  ERS+EE+PQPNIMS++V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+K +EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.2e-57

81.08

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKENP IDE+ S  E S+EE+PQPNIMSV+V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+KA+EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

7.3e-58

81.08

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP +DEH S  ERS+EE+PQPNIMSV+V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+KA+EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

9.6e-58

81.08

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP IDEH S  ERS+EE+PQPNIMSV+V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+KA+EE+D+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]

1.4e-56

79.73

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKENP IDEH S  ER +EE+PQPNIMSV+V DVDTSEDRMA+LE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNM +K +EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKR0 Ty3-gypsy retrotransposon protein

6.0e-58

80.41

Show/hide

Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP IDEH S  ERS+EE+PQPNIMS++V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+K +EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

A0A5A7SY17 Ty3-gypsy retrotransposon protein

3.0e-57

81.08

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKENP IDE+ S  E S+EE+PQPNIMSV+V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+KA+EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

A0A5A7TZU9 Ribonuclease H

3.5e-58

81.08

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP +DEH S  ERS+EE+PQPNIMSV+V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+KA+EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

A0A5A7U5H1 Ty3-gypsy retrotransposon protein

4.6e-58

81.08

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Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP IDEH S  ERS+EE+PQPNIMSV+V DVDTSEDRMAELE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNML+KA+EE+D+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

A0A5A7UJR2 Reverse transcriptase

6.7e-57

79.73

Show/hide

Query:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE
        MTS+ NTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKENP IDEH S  ER +EE+PQPNIMSV+V DVDTSEDRMA+LE
Subjt:  MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELE

Query:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL
        KKVNM +K +EERD+EIA L+NHIESRDAAESSHT T KN +KGKAI+
Subjt:  KKVNMLLKAIEERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACATCTAGAAGCAACACTTCCAAAGCTCTAAGCAACATCGGAAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAATCCTGGGATTGATGAGCATGGTTCGTCTTTTGAACGCTCAAGTG
AAGAGATGCCTCAGCCAAATATAATGTCGGTTATAGTGTTTGATGTCGATACAAGTGAGGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAATT
GAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATGTACCACCAAGAATAAGGACAAAGGGAAGGCAAT
TTTGTAG

mRNA sequence

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Protein sequence

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MTSRSNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPGIDEHGSSFERSSEEMPQPNIMSVIVFDVDTSEDRMAELEKKVNMLLKAI
EERDYEIASLRNHIESRDAAESSHTCTTKNKDKGKAIL

PI0022624 (gene) of Melon (PI 482460) v1 genome