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PI0022667 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022667
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:11928692..11930148
RNA-Seq ExpressionPI0022667
SyntenyPI0022667
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]9.9e-6068.51Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV  LVGHPNDKCP+++++ N++RKY+ + NTYN G +DNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSK
         EMKQQM+ LT AISK++GKGKL AQPD+ANVSAISLRSGKIL+TP++ E+ VTS  + L +K+E KEEK ETN  PS+SK
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-5964.43Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GLVGHPNDKCP+++++ N++RKY+ H NTYN G +DNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD
         EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP++ E+  TS P+ L  K+E KEEK ETN  P +SK      ++ P++D
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-5956.49Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GLVGHPNDKCP+++++ N+++KY+ H NTYN G +DNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP++ E+ VTS P+ L +K+E KEEK ETN  PS+SK     L+D    +P     
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF

Query:  SKQELDEFDDEKEMIVVETDEKLNLDGNNSDNLLFSPQE
        S+  L + +  +E  ++E   K+ ++ +  D +   P+E
Subjt:  SKQELDEFDDEKEMIVVETDEKLNLDGNNSDNLLFSPQE

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-6065.8Show/hide
Query:  TTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGV GLVGH N+KCP+++++ N++R+Y+ HSNTYN G +DNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD
        EMKQQM+ LT AISK++GKGKL AQ DHANVSAISLRSGKIL+TP++ E+ VTS P+ L +K+E KEEK ETN  PS+SK      ++ P++D
Subjt:  EMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]8.4e-5958.41Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GLVGHPNDKCP+++++ N+++KY+ H NTYN G +DNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP++ E+ VTS P+ L +K+E KEEK ETN  PS+SK     L+D    +P     
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF

Query:  SKQELDEFDDEKEMIVVETDEKLNLD
        S+  L + +  +E  ++E   K+ ++
Subjt:  SKQELDEFDDEKEMIVVETDEKLNLD

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919104.1e-5958.41Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GLVGHPNDKCP+++++ N+++KY+ H NTYN G +DNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP++ E+ VTS P+ L +K+E KEEK ETN  PS+SK     L+D    +P     
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF

Query:  SKQELDEFDDEKEMIVVETDEKLNLD
        S+  L + +  +E  ++E   K+ ++
Subjt:  SKQELDEFDDEKEMIVVETDEKLNLD

A0A5A7VQ60 Retrotransposon gag protein3.7e-6065.8Show/hide
Query:  TTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGV GLVGH N+KCP+++++ N++R+Y+ HSNTYN G +DNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD
        EMKQQM+ LT AISK++GKGKL AQ DHANVSAISLRSGKIL+TP++ E+ VTS P+ L +K+E KEEK ETN  PS+SK      ++ P++D
Subjt:  EMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD

A0A5D3CRR8 Retrotransposon gag protein1.1e-5964.43Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV GLVGHPNDKCP+++++ N++RKY+ H NTYN G +DNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD
         EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP++ E+  TS P+ L  K+E KEEK ETN  P +SK      ++ P++D
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDD

A0A5D3DCG3 Retrotransposon gag protein1.8e-5956.49Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGV GLVGHPNDKCP+++++ N+++KY+ H NTYN G +DNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF
         EMKQQM+ LT  ISK++GKGKLLAQPDHANVS ISLRS KIL+TP++ E+ VTS P+ L +K+E KEEK ETN  PS+SK     L+D    +P     
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSKE----LHDELEELPIDDEF

Query:  SKQELDEFDDEKEMIVVETDEKLNLDGNNSDNLLFSPQE
        S+  L + +  +E  ++E   K+ ++ +  D +   P+E
Subjt:  SKQELDEFDDEKEMIVVETDEKLNLDGNNSDNLLFSPQE

E5GBZ4 Retrotransposon gag protein4.8e-6068.51Show/hide
Query:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGV  LVGHPNDKCP+++++ N++RKY+ + NTYN G +DNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSK
         EMKQQM+ LT AISK++GKGKL AQPD+ANVSAISLRSGKIL+TP++ E+ VTS  + L +K+E KEEK ETN  PS+SK
Subjt:  NEMKQQMSHLTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSS-EENVTSTPILLENKDEKKEEKEETNTLPSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATTTGTTAAAGTTGCTAAGTGCGGGGTGTACGGTCTAGTTGGACATCCTAATGACAAGTGCCCAGACTTAGTTGA
TGAGGCAAATGTCATTAGGAAGTACAATTCTCATAGCAATACTTACAATGTCGGTTGTAAAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCACAAG
CGACATCCTCTTCAAACAATCAAGGTACGAATTTGGAAGATCTAGTTAAAGCTCTTGCTACTAACACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTG
ACCAATGCAATTAGCAAGTTAGAAGGTAAAGGCAAATTACTAGCTCAGCCTGATCATGCTAATGTAAGTGCCATCTCACTCAGAAGCGGTAAAATTCTGGAAACCCCTTC
AAGTGAAGAAAATGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAAGAAGAAACTAATACTTTACCATCTAGTTCTAAAGAATTGCATG
ATGAATTAGAAGAATTGCCTATTGATGATGAATTTTCTAAACAAGAATTGGATGAGTTTGATGATGAAAAAGAGATGATAGTAGTAGAAACGGATGAAAAATTAAATCTT
GATGGAAATAATTCTGACAATCTTTTATTTTCTCCCCAGGAAAAGGCATTGAGCTTAAGACTCTCCCACCCAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATTTGTTAAAGTTGCTAAGTGCGGGGTGTACGGTCTAGTTGGACATCCTAATGACAAGTGCCCAGACTTAGTTGA
TGAGGCAAATGTCATTAGGAAGTACAATTCTCATAGCAATACTTACAATGTCGGTTGTAAAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCACAAG
CGACATCCTCTTCAAACAATCAAGGTACGAATTTGGAAGATCTAGTTAAAGCTCTTGCTACTAACACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTG
ACCAATGCAATTAGCAAGTTAGAAGGTAAAGGCAAATTACTAGCTCAGCCTGATCATGCTAATGTAAGTGCCATCTCACTCAGAAGCGGTAAAATTCTGGAAACCCCTTC
AAGTGAAGAAAATGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAAGAAGAAACTAATACTTTACCATCTAGTTCTAAAGAATTGCATG
ATGAATTAGAAGAATTGCCTATTGATGATGAATTTTCTAAACAAGAATTGGATGAGTTTGATGATGAAAAAGAGATGATAGTAGTAGAAACGGATGAAAAATTAAATCTT
GATGGAAATAATTCTGACAATCTTTTATTTTCTCCCCAGGAAAAGGCATTGAGCTTAAGACTCTCCCACCCAACCTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGFVKVAKCGVYGLVGHPNDKCPDLVDEANVIRKYNSHSNTYNVGCKDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHL
TNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPSSEENVTSTPILLENKDEKKEEKEETNTLPSSSKELHDELEELPIDDEFSKQELDEFDDEKEMIVVETDEKLNL
DGNNSDNLLFSPQEKALSLRLSHPT