CuGenDBv2

Gene ID	PI0022788
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	40S ribosomal protein S25
Genome location	chr08:9935026..9937369
RNA-Seq Expression	PI0022788
Synteny	PI0022788
Gene Ontology terms	GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0016740 - transferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR004977 - Ribosomal protein S25 IPR036388 - Winged helix-like DNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060056.1 40S ribosomal protein S25-2 [Cucumis melo var. makuwa]

6.1e-24

100

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Query:  GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_004144662.1 40S ribosomal protein S25-2 [Cucumis sativus]

1.5e-22

74.42

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKL+SEAPKFKLITP+I+SDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_004291591.1 PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca]

6.7e-23

75.58

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIR+ISAH+SQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_008442240.1 PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]

1.8e-23

77.91

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

XP_022142384.1 40S ribosomal protein S25-2 [Momordica charantia]

4.0e-23

76.74

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYW1 40S ribosomal protein S25

7.3e-23

74.42

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKL+SEAPKFKLITP+I+SDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A1S3B608 40S ribosomal protein S25

8.6e-24

77.91

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A5A7V0P8 40S ribosomal protein S25

3.0e-24

100

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Query:  GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A5D3CKR9 40S ribosomal protein S25

1.2e-22

73.26

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLLSE PK+KL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

A0A6J1CLE7 40S ribosomal protein S25

1.9e-23

76.74

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

SwissProt top hits

e value

%identity

Alignment

P46301 40S ribosomal protein S25

1.4e-23

87.1

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Query:  TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        TYDKLLSEAPK+KLITPS+LSDRLRI+GSLAR+AI+DLMARGSIR++SAH+SQQIYTRATNT
Subjt:  TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Q8GYL5 40S ribosomal protein S25-3

1.2e-22

68.24

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN
        + K K  +GK + +          TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN

Q9SIK2 40S ribosomal protein S25-2

1.4e-23

68.6

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Q9SIW5 40S ribosomal protein S25-1

1.5e-20

64.29

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRAT
        + K K  +GK + +          TYDKL+SEAPKFKLITPSILSDRLRINGSLAR+AI+DLM +G+IR++S HSSQQI TRAT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRAT

Q9T029 40S ribosomal protein S25-4

1.6e-22

66.28

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +          TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Arabidopsis top hits

e value

%identity

Alignment

AT2G21580.1 Ribosomal protein S25 family protein

1.0e-24

68.6

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +         GTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

AT2G21580.2 Ribosomal protein S25 family protein

3.4e-25

87.3

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Query:  GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        GTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Subjt:  GTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

AT4G34555.1 Ribosomal protein S25 family protein

8.5e-24

68.24

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN
        + K K  +GK + +          TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN

AT4G39200.1 Ribosomal protein S25 family protein

1.1e-23

66.28

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Query:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        + K K  +GK + +          TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Subjt:  EPKTKMEQGKAEGEGE-----QHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

AT4G39200.2 Ribosomal protein S25 family protein

5.0e-24

85.48

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Query:  TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
        TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Subjt:  TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Sequences

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CDS sequence

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ATGGTTCGATGCCACGTCGTCGATAGCTCAATGGCAGTGACCGACGATGCTATGATTGAACCAAAAACAAAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACA
TGGAACCTATGACAAACTTCTTTCAGAAGCTCCGAAATTCAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATTAATGGATCATTGGCACGTCGGGCGATCA
AGGATTTAATGGCGAGAGGTTCTATTAGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACAAATACATGA

mRNA sequence

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GTCTTTCTCAATGAAAGTTGTTTACATAAAAAAAAAAAAAATTCAAATGTTTTACTGTAAAAGATAAAAATCATTGTAAAGAAATTAGGGAAAGTAAGCCCAATTTTCAA
AACCAAAAACAAAATACTAAATTGTTATTAAAAGAGTCTGTAGTTTCTTTAAAACTTGGTTTGGAATTTGGAATTTAGAATTAAGTGTCTCTTCAATGGTTCGATGCCAC
GTCGTCGATAGCTCAATGGCAGTGACCGACGATGCTATGATTGAACCAAAAACAAAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAACAACATGGAACCTATGACAA
ACTTCTTTCAGAAGCTCCGAAATTCAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATTAATGGATCATTGGCACGTCGGGCGATCAAGGATTTAATGGCGA
GAGGTTCTATTAGGCTCATATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACAAATACATGA

Protein sequence

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MVRCHVVDSSMAVTDDAMIEPKTKMEQGKAEGEGEQHGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

PI0022788 (gene) of Melon (PI 482460) v1 genome