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PI0022836 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022836
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr05:11501639..11502103
RNA-Seq ExpressionPI0022836
SyntenyPI0022836
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]4.5e-5068.59Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +   GKA  DRL+EIEEQMLYL+E+ D++R+LE R+EE+SEKAD IDAV GR++GLPI+ELL RVD LE  T   RT NYERG+SS+G  AHME+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
        GELD++QK ++EMINGMSEDFRV LDVVRNEIADV+AR++LTMRA+A+QAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]5.8e-5068.59Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +   GKA  DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRVD LE      RT NYERGDSSTGSVAH+E+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
         ELDSSQK ++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRA+ANQAPT GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-5067.95Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +  +GKA  DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRVD LE      RT NYERGDSSTGSVAH+E+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
         ELDSSQK ++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRA+ANQAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

TYK04141.1 uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa]1.0e-4968.59Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +   GKA  DRL+EIEEQMLYL+E+ D++R+LE R++E+SEKA+ IDAV GR++GLPIKELL RVD LE  T   RT NYERG+SS+G  AHME+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
        GELD++QK ++EMINGMSEDFRV LDVVRNEIADV+AR++LTMRA+ANQAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

TYK27261.1 uncharacterized protein E5676_scaffold244G00280 [Cucumis melo var. makuwa]2.0e-5070.51Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS+A   G A  DRL E+EEQMLYL E+ D++R+LE R+EE+SEKA  IDAV GR++GLPI+ELL RVDTLEA T   RT NYERGDSS+G VAHME+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
        GELDSSQK ++++INGMSEDF V LDVVRNEIADV+AR+NLTMRA+ANQAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

TrEMBL top hitse value%identityAlignment
A0A5A7UIP7 Reverse transcriptase2.8e-5068.59Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +   GKA  DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRVD LE      RT NYERGDSSTGSVAH+E+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
         ELDSSQK ++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRA+ANQAPT GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

A0A5D3BQN3 Retrotrans_gag domain-containing protein2.2e-5068.59Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +   GKA  DRL+EIEEQMLYL+E+ D++R+LE R+EE+SEKAD IDAV GR++GLPI+ELL RVD LE  T   RT NYERG+SS+G  AHME+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
        GELD++QK ++EMINGMSEDFRV LDVVRNEIADV+AR++LTMRA+A+QAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

A0A5D3BYE6 Reverse transcriptase3.7e-5067.95Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +  +GKA  DRL+E+EEQMLYL+E+ D++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRVD LE      RT NYERGDSSTGSVAH+E+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
         ELDSSQK ++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRA+ANQAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

A0A5D3CCE2 Retrotrans_gag domain-containing protein4.8e-5068.59Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS +   GKA  DRL+EIEEQMLYL+E+ D++R+LE R++E+SEKA+ IDAV GR++GLPIKELL RVD LE  T   RT NYERG+SS+G  AHME+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
        GELD++QK ++EMINGMSEDFRV LDVVRNEIADV+AR++LTMRA+ANQAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

A0A5D3DU93 Uncharacterized protein9.7e-5170.51Show/hide
Query:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI
        MS+A   G A  DRL E+EEQMLYL E+ D++R+LE R+EE+SEKA  IDAV GR++GLPI+ELL RVDTLEA T   RT NYERGDSS+G VAHME+R+
Subjt:  MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTT--RTSNYERGDSSTGSVAHMEKRI

Query:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI
        GELDSSQK ++++INGMSEDF V LDVVRNEIADV+AR+NLTMRA+ANQAP  GAI
Subjt:  GELDSSQKLIVEMINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATAGCGAAACAGATGGGCAAGGCCCACGCAGATCGATTGATAGAGATCGAAGAGCAGATGCTCTACCTGCTAGAAATTCTGGACACCGTCCGCTTCTTGGAAGG
TCGGATTGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAGGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAA
AGACTACAAGAACTAGTAACTACGAGCGTGGGGATAGTTCAACGGGCTCTGTTGCCCACATGGAGAAACGGATTGGCGAGCTAGATAGCTCCCAAAAGTTGATTGTCGAG
ATGATAAACGGCATGTCAGAGGATTTTCGTGTCGCTCTTGATGTCGTCAGGAATGAGATCGCAGATGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATAGCAAACCA
AGCTCCAACTGAAGGAGCTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTATAGCGAAACAGATGGGCAAGGCCCACGCAGATCGATTGATAGAGATCGAAGAGCAGATGCTCTACCTGCTAGAAATTCTGGACACCGTCCGCTTCTTGGAAGG
TCGGATTGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGATTACCTATAAAGGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAA
AGACTACAAGAACTAGTAACTACGAGCGTGGGGATAGTTCAACGGGCTCTGTTGCCCACATGGAGAAACGGATTGGCGAGCTAGATAGCTCCCAAAAGTTGATTGTCGAG
ATGATAAACGGCATGTCAGAGGATTTTCGTGTCGCTCTTGATGTCGTCAGGAATGAGATCGCAGATGTGAGTGCAAGGGTGAACCTCACGATGCGAGCCATAGCAAACCA
AGCTCCAACTGAAGGAGCTATATAA
Protein sequenceShow/hide protein sequence
MSIAKQMGKAHADRLIEIEEQMLYLLEILDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTTRTSNYERGDSSTGSVAHMEKRIGELDSSQKLIVE
MINGMSEDFRVALDVVRNEIADVSARVNLTMRAIANQAPTEGAI