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PI0022854 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022854
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionExopolygalacturonase-like
Genome locationchr01:25002951..25003187
RNA-Seq ExpressionPI0022854
SyntenyPI0022854
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043575.1 exopolygalacturonase-like [Cucumis melo var. makuwa]6.9e-3193.06Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

KAA0048658.1 exopolygalacturonase-like [Cucumis melo var. makuwa]2.0e-3091.67Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKI TFG+QNPPPCVV
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

KAA0048661.1 exopolygalacturonase-like [Cucumis melo var. makuwa]6.9e-3193.06Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

TYK18158.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.8e-3188.75Show/hide
Query:  MQESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        MQ SN   SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  MQESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

XP_031745094.1 exopolygalacturonase-like [Cucumis sativus]2.6e-3087.34Show/hide
Query:  QESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        +ESN   S+V FKNIRGTS TNVAVLLECSKLFPC+GVELRDINL+YGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  QESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

TrEMBL top hitse value%identityAlignment
A0A0A0KA01 Uncharacterized protein8.7e-3288.75Show/hide
Query:  MQESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        MQESN   S+V FKNIRGTS TNVAVLLECSKLFPC+GVELRDINL+YGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  MQESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

A0A5A7TQ89 Exopolygalacturonase-like3.3e-3193.06Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

A0A5A7U0D6 Exopolygalacturonase-like9.7e-3191.67Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKI TFG+QNPPPCVV
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

A0A5A7U4W1 Exopolygalacturonase-like3.3e-3193.06Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

A0A5D3D3B1 Exopolygalacturonase-like8.7e-3288.75Show/hide
Query:  MQESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV
        MQ SN   SDVHFKNIRGTS TNVAVLLECS+L PC+GVELRDINLTYGGTNLRNTTIVSSCSNAKIATFG+QNPPPCVV
Subjt:  MQESN--CSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)1.4e-1051.43Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC
        S + FKNI+GTS T  AV L CSK FPC+GVEL DI+LTY G   +     S C N K    G Q P  C
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC

P26216 Exopolygalacturonase3.8e-0846.38Show/hide
Query:  DVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC
        DV FKNI GTS T  AV L C+   PC GV + D+N+ Y GTN +   I   C+NAK +T G      C
Subjt:  DVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC

P35337 Polygalacturonase2.9e-0845.71Show/hide
Query:  DVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV
        D+ F+NIRGTS    AV L CSK  PC+ VE+ DIN+ Y G +   T     C+N      G QNP  CV
Subjt:  DVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV

P48979 Polygalacturonase2.2e-0842.25Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV
        SDV +++I GTS T VAV  +CS   PC  ++L D+ LTY     +N    SSCS+A   T G+  P  C+
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV

Q05967 Polygalacturonase2.6e-0948.57Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC
        S V F+NI+GTS T  AV L  SK  PC+G+E+ DI++TY G   +     SSC N K +  G QNPP C
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC

Arabidopsis top hitse value%identityAlignment
AT1G05660.1 Pectin lyase-like superfamily protein1.6e-0943.66Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV
        S V +KNI+GTS T  A+ L CSK  PC G+ L+DI LTY     + T   S C NA   + G+  P  C+
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV

AT3G07840.1 Pectin lyase-like superfamily protein1.6e-0947.83Show/hide
Query:  DVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC
        D+ FKNIRGTS    AV L CSK  PC  VE+ +INL Y G +   T +   CSN      G QNP  C
Subjt:  DVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC

AT3G14040.1 Pectin lyase-like superfamily protein7.1e-1048.57Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC
        SDV  KNI+GTS T VAV L CSK  PC  + L DINL + G   +    VS+CSN K    G   P  C
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPC

AT3G59850.1 Pectin lyase-like superfamily protein1.6e-0942.25Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV
        SDV F +I GTS T V V L+CS   PC G+ ++D+ LTY     RN    + CS+A  +  G Q P  C+
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCV

AT4G18180.1 Pectin lyase-like superfamily protein2.4e-1043.59Show/hide
Query:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINL----TYGG----TNLRNTTIVSSCSNAKIATFGIQNPPPC
        S+++FKNIRGTS + VAV L CS+  PC  V L +++L    + GG    +N  N  + SSC N +    G Q PPPC
Subjt:  SDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINL----TYGG----TNLRNTTIVSSCSNAKIATFGIQNPPPC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAATCGAATTGTAGTGACGTACACTTCAAGAACATTCGGGGAACATCGATAACGAACGTGGCGGTGTTGTTGGAGTGCAGCAAGTTGTTTCCATGCGACGGGGT
GGAGCTGAGGGACATTAACTTGACTTATGGAGGCACCAACTTGAGAAATACGACCATTGTTTCTTCATGTTCGAATGCAAAGATTGCTACTTTTGGGATTCAAAACCCAC
CCCCTTGTGTTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAATCGAATTGTAGTGACGTACACTTCAAGAACATTCGGGGAACATCGATAACGAACGTGGCGGTGTTGTTGGAGTGCAGCAAGTTGTTTCCATGCGACGGGGT
GGAGCTGAGGGACATTAACTTGACTTATGGAGGCACCAACTTGAGAAATACGACCATTGTTTCTTCATGTTCGAATGCAAAGATTGCTACTTTTGGGATTCAAAACCCAC
CCCCTTGTGTTGTATAA
Protein sequenceShow/hide protein sequence
MQESNCSDVHFKNIRGTSITNVAVLLECSKLFPCDGVELRDINLTYGGTNLRNTTIVSSCSNAKIATFGIQNPPPCVV