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PI0022878 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022878
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPMD domain-containing protein
Genome locationchr12:16416917..16417497
RNA-Seq ExpressionPI0022878
SyntenyPI0022878
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033822.1 uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa]1.5e-2752.08Show/hide
Query:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE
        K GDYL EG+Q+LIDR T P +K K  KKIE+   +  KKIC S+ EE  V K+++GTK LV  STP  + K   R   D V K+ + L T K P  H E
Subjt:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE

Query:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPM
        +  ++NDDRHWKR K+S KQ I+D++ P EVLD+ QF DITSPM
Subjt:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPM

KAA0062705.1 uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa]3.2e-2752.27Show/hide
Query:  GDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIEES
        GDYL EG+Q+LIDR T P +K K  KKIE +  SG+KKICSS+ EE+ V K  +GTKCLV  STP  + K P R   D V K+   L TGK P  H E+ 
Subjt:  GDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIEES

Query:  QSSNDDRHWKRSKKSAKQPINDKESPNEVLDI
        +SSND+RHWKR K+  K  I++++ P EV D+
Subjt:  QSSNDDRHWKRSKKSAKQPINDKESPNEVLDI

TYK21863.1 uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa]3.8e-2850.99Show/hide
Query:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE
        K GDYL EG+Q+LIDR T P +K K  KKIE+   +  KKIC S+ EE  V K+++GTK LV  STP  + K   R   D V K+ + L T K P  H E
Subjt:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE

Query:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPMVIMSYIL
        +  ++NDDRHWKR K+S KQ I+D++ P EVLD+ QF DITSPMV    +L
Subjt:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPMVIMSYIL

XP_031739998.1 uncharacterized protein LOC116403342 [Cucumis sativus]2.0e-3260.16Show/hide
Query:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE
        K GDYL EGVQHLIDR T PH+K K  KKIE++FGSG++KICS E +ER V KI+ GTK LVD+ +  TR K   +  +D VGK+  + I  KHP + IE
Subjt:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE

Query:  ESQSSNDDRHWKRSKKSAKQPINDKESP
        +SQSSNDDRHWKR KK  KQ I+D+ESP
Subjt:  ESQSSNDDRHWKRSKKSAKQPINDKESP

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]3.5e-3759.31Show/hide
Query:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE
        K GDYL EGVQHLIDR T PH+K K  KKIE++FGSG++KICS E +ER V KI+ GTK LVD+ +  TR K   +  +D VGK+  + I  KHP + IE
Subjt:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE

Query:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPMV
        +SQSSNDDRHWKR KK  KQ I+D+ESP  V D  QF D+ SPMV
Subjt:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPMV

TrEMBL top hitse value%identityAlignment
A0A5A7SRI5 Uncharacterized protein7.0e-2852.08Show/hide
Query:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE
        K GDYL EG+Q+LIDR T P +K K  KKIE+   +  KKIC S+ EE  V K+++GTK LV  STP  + K   R   D V K+ + L T K P  H E
Subjt:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE

Query:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPM
        +  ++NDDRHWKR K+S KQ I+D++ P EVLD+ QF DITSPM
Subjt:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPM

A0A5A7V0Y4 Uncharacterized protein1.6e-2753.85Show/hide
Query:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE
        K GDYL +G+Q+LIDR T   +K K  KKIE++  SG+KKICSS++EE+ V K KKGTKCLV  STP  + K   R   + V K+  IL TGK P  H E
Subjt:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE

Query:  ESQSSNDDRHWKRSKKSAKQPINDKESPNE
        +S SSNDD HWKR K+  KQ I+D++ P E
Subjt:  ESQSSNDDRHWKRSKKSAKQPINDKESPNE

A0A5D3D3U4 Reverse transcriptase6.6e-2658.77Show/hide
Query:  TFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIEESQSSNDDRHWKRSKKS
        T P+VK K  KK EN+F SG KKI S E+EER +GK ++GT+C+VDDSTP  + KL DRD  D +GK+  ILIT KHP EH EESQS+N D HWKR K  
Subjt:  TFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIEESQSSNDDRHWKRSKKS

Query:  AKQPINDKESPNEV
         KQ I+D+E   EV
Subjt:  AKQPINDKESPNEV

A0A5D3DAL3 PMD domain-containing protein1.6e-2752.27Show/hide
Query:  GDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIEES
        GDYL EG+Q+LIDR T P +K K  KKIE +  SG+KKICSS+ EE+ V K  +GTKCLV  STP  + K P R   D V K+   L TGK P  H E+ 
Subjt:  GDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIEES

Query:  QSSNDDRHWKRSKKSAKQPINDKESPNEVLDI
        +SSND+RHWKR K+  K  I++++ P EV D+
Subjt:  QSSNDDRHWKRSKKSAKQPINDKESPNEVLDI

A0A5D3DEA3 Uncharacterized protein1.9e-2850.99Show/hide
Query:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE
        K GDYL EG+Q+LIDR T P +K K  KKIE+   +  KKIC S+ EE  V K+++GTK LV  STP  + K   R   D V K+ + L T K P  H E
Subjt:  KLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIE

Query:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPMVIMSYIL
        +  ++NDDRHWKR K+S KQ I+D++ P EVLD+ QF DITSPMV    +L
Subjt:  ESQSSNDDRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPMVIMSYIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGCAAATTAGGAGATTACCTCTCAGAAGGAGTGCAACATTTGATAGACCGCACCACTTTTCCTCATGTCAAACCTAAACCCCTCAAGAAAATCGAGAATGATTT
TGGAAGTGGGAGTAAGAAGATATGCTCCTCTGAAATTGAAGAACGACGAGTTGGAAAAATTAAGAAGGGTACAAAATGCTTGGTAGATGATTCAACTCCTCATACACGAT
CTAAACTCCCTGACAGAGATAGTGTTGACAAAGTGGGTAAGGAAACCTACATATTAATAACCGGCAAACACCCTTTTGAGCACATTGAAGAGAGTCAAAGTAGCAATGAT
GATCGTCATTGGAAGAGATCCAAGAAGTCCGCCAAACAACCGATCAATGATAAAGAGTCTCCTAATGAAGTTCTTGACATCACACAGTTTTTGGACATCACTTCTCCCAT
GGTGATCATGTCCTACATATTGGAGGAACCTCAAAGCCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGCAAATTAGGAGATTACCTCTCAGAAGGAGTGCAACATTTGATAGACCGCACCACTTTTCCTCATGTCAAACCTAAACCCCTCAAGAAAATCGAGAATGATTT
TGGAAGTGGGAGTAAGAAGATATGCTCCTCTGAAATTGAAGAACGACGAGTTGGAAAAATTAAGAAGGGTACAAAATGCTTGGTAGATGATTCAACTCCTCATACACGAT
CTAAACTCCCTGACAGAGATAGTGTTGACAAAGTGGGTAAGGAAACCTACATATTAATAACCGGCAAACACCCTTTTGAGCACATTGAAGAGAGTCAAAGTAGCAATGAT
GATCGTCATTGGAAGAGATCCAAGAAGTCCGCCAAACAACCGATCAATGATAAAGAGTCTCCTAATGAAGTTCTTGACATCACACAGTTTTTGGACATCACTTCTCCCAT
GGTGATCATGTCCTACATATTGGAGGAACCTCAAAGCCGATGA
Protein sequenceShow/hide protein sequence
MACKLGDYLSEGVQHLIDRTTFPHVKPKPLKKIENDFGSGSKKICSSEIEERRVGKIKKGTKCLVDDSTPHTRSKLPDRDSVDKVGKETYILITGKHPFEHIEESQSSND
DRHWKRSKKSAKQPINDKESPNEVLDITQFLDITSPMVIMSYILEEPQSR