; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0022908 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022908
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:3619742..3620620
RNA-Seq ExpressionPI0022908
SyntenyPI0022908
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-10070Show/hide
Query:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL
        GSITTWGSLKKK                          ESL +YWE+FKELCA+FPHHHI  PSLIQYFY GLL+ DRNTVDAA GGALA+K PTEAREL
Subjt:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL

Query:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG
        ISRMA+NSQ FGNRASEL+NSLTKEVSELKS+MLNMTTLLTSFVQG  +KV KC V GLVGHPNDKCP+++EE N+++KYDP+SNTYN GWRDNP LRWG
Subjt:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG

Query:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHANDMIL
        NDNQ+ +QA T+S+NQ TNL+D++KALATNT+SFQ EMKQQM+ LT  ISK++GKGKLPAQP+HAN  ++
Subjt:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHANDMIL

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-9880.36Show/hide
Query:  EYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTS
        EYWERFKELCASFPHHHISDPSLIQYFYSGLL+ DRN VDAA  GALADKTP EARELI RMAENSQNFGNRASELDNSLTKEVSELKS+MLNMTTLLTS
Subjt:  EYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTS

Query:  FVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQM
        FVQG  +KV KCGV GLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQM
Subjt:  FVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQM

Query:  SHLTNAISKVEGKGKLPAQPDHAN
        + LT  +SK++GKGKLPAQPDH N
Subjt:  SHLTNAISKVEGKGKLPAQPDHAN

KAA0056713.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-10071.8Show/hide
Query:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL
        GSITTWGSLKKK                          ESLS YWERFKELCASFP  HIS+PSLIQYFYSGLL+ D+NTVDAA GGALADKTP EA+EL
Subjt:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL

Query:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG
        ISRMAENSQ+FGNRASEL NSLTKEVSE+KS+MLNMTTLLTSFVQG  +KV KCGV G VGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWG
Subjt:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG

Query:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN
        NDNQ  +QA  +S+NQGTNLE ++KALATNT SFQ EMKQQ++ LT AISK++GKGKL AQPDHAN
Subjt:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-10472.93Show/hide
Query:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL
        GSITTWGSLKKK                          ESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D   GGALADKTPTEAREL
Subjt:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL

Query:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG
        ISRM ENSQ+FGNRASELDNSLTKEVSELKS+MLNMTTLLTSFVQG   KV KCGV GLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWG
Subjt:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG

Query:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN
        NDNQ+ +QA ++S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GKGKLPAQPD+AN
Subjt:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-10271.64Show/hide
Query:  RAGSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAR
        +  SITTWGSLKKK                          ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL+ DRNTVDA  G ALADKTPTEA 
Subjt:  RAGSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAR

Query:  ELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR
        ELISRMAEN Q+FGNRAS+L+N LTKEVSELKSKMLNMTTLLTSFVQG   KV KCGV GLVGHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLR
Subjt:  ELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR

Query:  WGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN
        WGND Q  +QA ++S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GKGKLPAQPDHAN
Subjt:  WGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein5.6e-9980.36Show/hide
Query:  EYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTS
        EYWERFKELCASFPHHHISDPSLIQYFYSGLL+ DRN VDAA  GALADKTP EARELI RMAENSQNFGNRASELDNSLTKEVSELKS+MLNMTTLLTS
Subjt:  EYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTS

Query:  FVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQM
        FVQG  +KV KCGV GLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQM
Subjt:  FVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQM

Query:  SHLTNAISKVEGKGKLPAQPDHAN
        + LT  +SK++GKGKLPAQPDH N
Subjt:  SHLTNAISKVEGKGKLPAQPDHAN

A0A5A7SRF5 Retrotransposon gag protein6.0e-10170Show/hide
Query:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL
        GSITTWGSLKKK                          ESL +YWE+FKELCA+FPHHHI  PSLIQYFY GLL+ DRNTVDAA GGALA+K PTEAREL
Subjt:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL

Query:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG
        ISRMA+NSQ FGNRASEL+NSLTKEVSELKS+MLNMTTLLTSFVQG  +KV KC V GLVGHPNDKCP+++EE N+++KYDP+SNTYN GWRDNP LRWG
Subjt:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG

Query:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHANDMIL
        NDNQ+ +QA T+S+NQ TNL+D++KALATNT+SFQ EMKQQM+ LT  ISK++GKGKLPAQP+HAN  ++
Subjt:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHANDMIL

A0A5A7ULC7 Retrotransposon gag protein6.0e-10171.8Show/hide
Query:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL
        GSITTWGSLKKK                          ESLS YWERFKELCASFP  HIS+PSLIQYFYSGLL+ D+NTVDAA GGALADKTP EA+EL
Subjt:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL

Query:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG
        ISRMAENSQ+FGNRASEL NSLTKEVSE+KS+MLNMTTLLTSFVQG  +KV KCGV G VGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWG
Subjt:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG

Query:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN
        NDNQ  +QA  +S+NQGTNLE ++KALATNT SFQ EMKQQ++ LT AISK++GKGKL AQPDHAN
Subjt:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN

A0A5A7V0Q7 Retrotransposon gag protein8.9e-10572.93Show/hide
Query:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL
        GSITTWGSLKKK                          ESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D   GGALADKTPTEAREL
Subjt:  GSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAREL

Query:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG
        ISRM ENSQ+FGNRASELDNSLTKEVSELKS+MLNMTTLLTSFVQG   KV KCGV GLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWG
Subjt:  ISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWG

Query:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN
        NDNQ+ +QA ++S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GKGKLPAQPD+AN
Subjt:  NDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN

A0A5D3CFE7 Retrotransposon gag protein1.4e-10271.64Show/hide
Query:  RAGSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAR
        +  SITTWGSLKKK                          ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL+ DRNTVDA  G ALADKTPTEA 
Subjt:  RAGSITTWGSLKKK--------------------------ESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEAR

Query:  ELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR
        ELISRMAEN Q+FGNRAS+L+N LTKEVSELKSKMLNMTTLLTSFVQG   KV KCGV GLVGHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLR
Subjt:  ELISRMAENSQNFGNRASELDNSLTKEVSELKSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR

Query:  WGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN
        WGND Q  +QA ++S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GKGKLPAQPDHAN
Subjt:  WGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKVEGKGKLPAQPDHAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTACTACCTAGAGCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAGGAGTCCTTGTCAGAATACTGGGAAAGGTTTAAGGAGCTCTGTGCTAGCTTCCC
CCATCACCATATTTCTGATCCATCACTAATACAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTCGACGCTGCAACAGGTGGTGCGTTGGCAGACAAAA
CCCCTACTGAGGCTAGAGAGCTCATTTCGAGGATGGCTGAAAATTCACAGAATTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTT
AAATCAAAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTATCCGGTCTAGTCGGACATCCTAATGACAA
GTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATAGTAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACA
ACCAAAGACCCTCACAAGCAACCACCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAA
CAACAAATGTCTCATCTTACCAATGCCATAAGCAAAGTAGAAGGTAAAGGCAAACTTCCAGCTCAGCCTGATCATGCCAACGATATGATACTAAGGCCCTACACAAGCCC
TTATGCACAAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTACTACCTAGAGCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAGGAGTCCTTGTCAGAATACTGGGAAAGGTTTAAGGAGCTCTGTGCTAGCTTCCC
CCATCACCATATTTCTGATCCATCACTAATACAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTCGACGCTGCAACAGGTGGTGCGTTGGCAGACAAAA
CCCCTACTGAGGCTAGAGAGCTCATTTCGAGGATGGCTGAAAATTCACAGAATTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTT
AAATCAAAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTATCCGGTCTAGTCGGACATCCTAATGACAA
GTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATAGTAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACA
ACCAAAGACCCTCACAAGCAACCACCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAA
CAACAAATGTCTCATCTTACCAATGCCATAAGCAAAGTAGAAGGTAAAGGCAAACTTCCAGCTCAGCCTGATCATGCCAACGATATGATACTAAGGCCCTACACAAGCCC
TTATGCACAAAAGTGA
Protein sequenceShow/hide protein sequence
MALLPRAGSITTWGSLKKKESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAATGGALADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSEL
KSKMLNMTTLLTSFVQGGSVKVAKCGVSGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATTSSNNQGTNLEDLVKALATNTISFQNEMK
QQMSHLTNAISKVEGKGKLPAQPDHANDMILRPYTSPYAQK