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PI0022937 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022937
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr02:16592217..16592648
RNA-Seq ExpressionPI0022937
SyntenyPI0022937
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-5377.7Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPF+ A NIWEQ+SKPPKGGI+IKENP IDEH+S    S+E++P+PNIMS+MVT+V TSEDRMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERD+EIA LKN+IES DAAESSHTHT+KN +KGKAI+
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

KAA0037441.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-5379.05Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPFE A NIWEQ+SKPPKGGI+IKEN  IDEH S    SSE+MP PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH HT+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-5379.05Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPFE A NIWEQ+SKPPKGGI+IKEN  IDEH S    SSE+MP PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH HT+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

KAA0056526.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-5377.03Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPFE A NIWEQ+SKPPKGGI+IKENP +DEH+S    ++E++P+PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH HT+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

TYK14887.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-5379.05Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPFE A NIWEQ+SKPPKGGI+IKEN  IDEH S    SSE+MP PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH HT+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

TrEMBL top hitse value%identityAlignment
A0A5A7SKR0 Ty3-gypsy retrotransposon protein1.1e-5377.7Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPF+ A NIWEQ+SKPPKGGI+IKENP IDEH+S    S+E++P+PNIMS+MVT+V TSEDRMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERD+EIA LKN+IES DAAESSHTHT+KN +KGKAI+
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

A0A5A7T777 Ty3-gypsy retrotransposon protein8.7e-5479.05Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPFE A NIWEQ+SKPPKGGI+IKEN  IDEH S    SSE+MP PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH HT+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

A0A5A7TJG8 Ty3-gypsy retrotransposon protein1.1e-5377.7Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNT +RS+E QS+EDMPPFE A NIWEQ+SKPPKGGI+IKENP IDEH S    SSE+MP PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH +T+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

A0A5A7UQF4 Ty3-gypsy retrotransposon protein5.1e-5477.03Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPFE A NIWEQ+SKPPKGGI+IKENP +DEH+S    ++E++P+PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH HT+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

A0A5D3CSH0 Ty3-gypsy retrotransposon protein1.1e-5379.05Show/hide
Query:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE
        MTS+GNTSKALSDIGK PNTRSRS+E QS EDMPPFE A NIWEQ+SKPPKGGI+IKEN  IDEH S    SSE+MP PNIMS+MVTNV TSE+RMAELE
Subjt:  MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFE-ANNIWEQLSKPPKGGIIIKENPVIDEHSS----SSEKMPRPNIMSLMVTNVGTSEDRMAELE

Query:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL
         KVNML+KVVEERDYEIA LKN+IES DAAESSH HT+KN DKGKA++
Subjt:  TKVNMLLKVVEERDYEIASLKNYIESLDAAESSHTHTMKNNDKGKAIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCTAAAGGCAACACTTCCAAAGCTCTAAGCGACATCGGTAAAATGCCAAATACTCGCAGCCGCTCAAAGGAGGCTCAATCGTATGAGGATATGCCACCCTTTGA
GGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCACAGTTCGTCCTCTGAGAAAATGCCTCGCC
CAAATATAATGTCTCTTATGGTGACTAACGTGGGTACAAGTGAAGACAGAATGGCAGAGCTTGAAACGAAGGTTAACATGCTCCTAAAGGTAGTTGAAGAAAGGGATTAT
GAGATTGCATCTTTAAAAAATTACATTGAAAGTCTTGACGCTGCTGAATCAAGTCACACACATACCATGAAGAATAATGACAAAGGGAAGGCAATTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCTAAAGGCAACACTTCCAAAGCTCTAAGCGACATCGGTAAAATGCCAAATACTCGCAGCCGCTCAAAGGAGGCTCAATCGTATGAGGATATGCCACCCTTTGA
GGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCACAGTTCGTCCTCTGAGAAAATGCCTCGCC
CAAATATAATGTCTCTTATGGTGACTAACGTGGGTACAAGTGAAGACAGAATGGCAGAGCTTGAAACGAAGGTTAACATGCTCCTAAAGGTAGTTGAAGAAAGGGATTAT
GAGATTGCATCTTTAAAAAATTACATTGAAAGTCTTGACGCTGCTGAATCAAGTCACACACATACCATGAAGAATAATGACAAAGGGAAGGCAATTTTGTAA
Protein sequenceShow/hide protein sequence
MTSKGNTSKALSDIGKMPNTRSRSKEAQSYEDMPPFEANNIWEQLSKPPKGGIIIKENPVIDEHSSSSEKMPRPNIMSLMVTNVGTSEDRMAELETKVNMLLKVVEERDY
EIASLKNYIESLDAAESSHTHTMKNNDKGKAIL