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PI0023051 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023051
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationchr11:17856441..17857272
RNA-Seq ExpressionPI0023051
SyntenyPI0023051
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX98953.1 Mitochondrial transcription termination factor family protein [Theobroma cacao]2.2e-3750.49Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------
        MVECLATLG+K H                 E KLCPL AFFQAL +PEKQLGKMILLNPRLISYSI  KLTEIVDFLA+ GL                  
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------

Query:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY
             +L PT EFLK +GL + DLQ +A+ +PEVL                 C  GDR          PILIKSIK+S+EPRI FL+EVMGR+IEEVA Y
Subjt:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY

Query:  RTSF
           F
Subjt:  RTSF

KAE8646817.1 hypothetical protein Csa_005087 [Cucumis sativus]2.2e-3750.48Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------
        MVECLATLGS PH                 E+KLCP  AFFQAL+IPEK LGKMILLNPRLI YSIVPKLTEIVDF A+FGLDK                
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------

Query:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG
              L PTL+F K IGLKD+DLQAIA GYPEVL CR  +++                          PILIKSI+HSIEP+INFLIE     ++++  
Subjt:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG

Query:  YRTSFNII
         RTSF+++
Subjt:  YRTSFNII

XP_006486552.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Citrus sinensis]2.2e-3749.27Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------
        MVECLATLG+KP+                 E KLCPL AFFQAL +PEKQLG+MILLNPRLISYSI  KLTE VDFLAS GL                  
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------

Query:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG
            ++L PT EFLK +GLK++DLQ +AV +PEVL CR  +++                          PILIKSIK+S+EPRI FL+EVMGR+I+EVA 
Subjt:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG

Query:  YRTSF
        Y   F
Subjt:  YRTSF

XP_021301114.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Herrania umbratica]2.9e-3750.49Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------
        MVECLATLG+K H                 E KLCPL AFFQAL +PEKQLGKMILLNPRLISYSI  KLTEIVDFLAS GL                  
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------

Query:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY
             +L PT EFLK +GL   DLQ +A+ +PEVL                 C  GDR          P+LIKSIK+S+EPRI FL+EVMGR+IEEVA Y
Subjt:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY

Query:  RTSF
           F
Subjt:  RTSF

XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]2.8e-4045.62Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------
        MVECLATLGS PH                 E+KLCP  AFFQAL+IPEK LGKMILLNPRLI YSIVPKLTEIVDF A+FGLDK                
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------

Query:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG
              L PTL+F K IGLKD+DLQAIA GYPEVL CR  +++                          PILIKSI+HSIEP+INFLIE      EEVAG
Subjt:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG

Query:  Y---------------------------------------RTSFNIIAFQQHTLDFFFRAPPLSRIKISLFALY
        Y                                          F ++     TL  F  APPLSRI ISLFALY
Subjt:  Y---------------------------------------RTSFNIIAFQQHTLDFFFRAPPLSRIKISLFALY

TrEMBL top hitse value%identityAlignment
A0A061E9I9 Mitochondrial transcription termination factor family protein1.1e-3750.49Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------
        MVECLATLG+K H                 E KLCPL AFFQAL +PEKQLGKMILLNPRLISYSI  KLTEIVDFLA+ GL                  
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------

Query:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY
             +L PT EFLK +GL + DLQ +A+ +PEVL                 C  GDR          PILIKSIK+S+EPRI FL+EVMGR+IEEVA Y
Subjt:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY

Query:  RTSF
           F
Subjt:  RTSF

A0A0A0KE07 Uncharacterized protein3.8e-4350.41Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------
        MVECLATLGS PH                 E+KLCP  AFFQAL+IPEK LGKMILLNPRLI YSIVPKLTEIVDF A+FGLDK                
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------

Query:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG
              L PTL+F K IGLKD+DLQAIA GYPEVL CR  +++                          PILIKSI+HSIEP+INFLIE     ++++  
Subjt:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG

Query:  YRTSFNIIAF---------QQHTLDFFFRAPPLSRIKISLFALY
         RTSF++  F            TL  F  APPLSRI ISLFALY
Subjt:  YRTSFNIIAF---------QQHTLDFFFRAPPLSRIKISLFALY

A0A6J1BSC3 transcription termination factor MTERF6, chloroplastic/mitochondrial1.4e-3750.49Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------
        MVECLATLG+K H                 E KLCPL AFFQAL +PEKQLGKMILLNPRLISYSI  KLTEIVDFLAS GL                  
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------

Query:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY
             +L PT EFLK +GL   DLQ +A+ +PEVL                 C  GDR          P+LIKSIK+S+EPRI FL+EVMGR+IEEVA Y
Subjt:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY

Query:  RTSF
           F
Subjt:  RTSF

A0A6J1C2G0 transcription termination factor MTERF6, chloroplastic/mitochondrial1.8e-3748.78Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------
        MVECL TL +KPH                 E KLCPL AFFQAL +PEKQLGKMILLNPRLISYSI  KL E VDFLA  GL K                
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDK----------------

Query:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG
              L PT EFLK IGLK++DLQA+A+ +P++L CR  D++                          PILIKSIKHS+EPRI FL+E+MGR++EEVA 
Subjt:  ------LSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVAG

Query:  YRTSF
        Y   F
Subjt:  YRTSF

A0A6P6AG45 transcription termination factor MTERF6, chloroplastic/mitochondrial1.8e-3750Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------
        MVECLATLG+K H                 E KLCPL AFFQAL +PEKQLGKMILLNPRLISYSI  KLTEIVDFLA+ GL                  
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGL------------------

Query:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY
             +L PT EFLK +GL + DLQ +A+ +PEVL                 C  GDR          PILIKSIKHS+EPRI FL+EVMGR+I+E A Y
Subjt:  ----DKLSPTLEFLKYIGLKDIDLQAIAVGYPEVL----------------YCRSGDR--------LSPILIKSIKHSIEPRINFLIEVMGRRIEEVAGY

Query:  RTSF
           F
Subjt:  RTSF

SwissProt top hitse value%identityAlignment
Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial6.1e-3040.58Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------
        MVECL++LG  P                  E KLCPL AFFQAL +PE QLGKMIL NPRLISYSI  KLT IV FLAS GLD                 
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------

Query:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA
             +L PT EFLK  +GL +  ++++ + +P++L CR  +++                           ILIKS+K+S++PRI FL++VMGR ++EVA
Subjt:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA

Query:  GYRTSFN
         Y   F+
Subjt:  GYRTSFN

Arabidopsis top hitse value%identityAlignment
AT4G38160.1 Mitochondrial transcription termination factor family protein4.3e-3140.58Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------
        MVECL++LG  P                  E KLCPL AFFQAL +PE QLGKMIL NPRLISYSI  KLT IV FLAS GLD                 
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------

Query:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA
             +L PT EFLK  +GL +  ++++ + +P++L CR  +++                           ILIKS+K+S++PRI FL++VMGR ++EVA
Subjt:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA

Query:  GYRTSFN
         Y   F+
Subjt:  GYRTSFN

AT4G38160.2 Mitochondrial transcription termination factor family protein4.3e-3140.58Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------
        MVECL++LG  P                  E KLCPL AFFQAL +PE QLGKMIL NPRLISYSI  KLT IV FLAS GLD                 
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------

Query:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA
             +L PT EFLK  +GL +  ++++ + +P++L CR  +++                           ILIKS+K+S++PRI FL++VMGR ++EVA
Subjt:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA

Query:  GYRTSFN
         Y   F+
Subjt:  GYRTSFN

AT4G38160.3 Mitochondrial transcription termination factor family protein4.3e-3140.58Show/hide
Query:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------
        MVECL++LG  P                  E KLCPL AFFQAL +PE QLGKMIL NPRLISYSI  KLT IV FLAS GLD                 
Subjt:  MVECLATLGSKPH-----------------ENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLD-----------------

Query:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA
             +L PT EFLK  +GL +  ++++ + +P++L CR  +++                           ILIKS+K+S++PRI FL++VMGR ++EVA
Subjt:  -----KLSPTLEFLK-YIGLKDIDLQAIAVGYPEVLYCRSGDRL-------------------------SPILIKSIKHSIEPRINFLIEVMGRRIEEVA

Query:  GYRTSFN
         Y   F+
Subjt:  GYRTSFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAGTGCCTTGCAACTCTGGGTAGTAAGCCGCATGAAAACAAGCTTTGCCCACTTTTTGCTTTTTTTCAAGCATTGAATATCCCTGAGAAGCAGCTTGGGAAGAT
GATTTTGCTGAATCCTAGGCTTATTAGCTACAGCATTGTGCCGAAGCTTACTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGCTAAGTCCTACATTAGAGT
TTCTGAAATATATAGGTTTGAAGGATATAGATCTTCAAGCAATTGCAGTTGGCTATCCTGAGGTTTTATATTGTAGATCTGGTGATCGGTTATCCCCTATTTTGATTAAG
AGCATTAAACATTCTATAGAACCACGGATTAATTTCTTGATAGAAGTCATGGGGAGAAGAATCGAAGAAGTTGCTGGTTACCGGACTTCTTTTAACATTATTGCTTTTCA
ACAACACACTCTTGATTTTTTTTTCCGTGCTCCTCCCTTATCCCGAATCAAAATTAGCTTATTTGCACTATATAGTTTGATTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAGTGCCTTGCAACTCTGGGTAGTAAGCCGCATGAAAACAAGCTTTGCCCACTTTTTGCTTTTTTTCAAGCATTGAATATCCCTGAGAAGCAGCTTGGGAAGAT
GATTTTGCTGAATCCTAGGCTTATTAGCTACAGCATTGTGCCGAAGCTTACTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGCTAAGTCCTACATTAGAGT
TTCTGAAATATATAGGTTTGAAGGATATAGATCTTCAAGCAATTGCAGTTGGCTATCCTGAGGTTTTATATTGTAGATCTGGTGATCGGTTATCCCCTATTTTGATTAAG
AGCATTAAACATTCTATAGAACCACGGATTAATTTCTTGATAGAAGTCATGGGGAGAAGAATCGAAGAAGTTGCTGGTTACCGGACTTCTTTTAACATTATTGCTTTTCA
ACAACACACTCTTGATTTTTTTTTCCGTGCTCCTCCCTTATCCCGAATCAAAATTAGCTTATTTGCACTATATAGTTTGATTATATAA
Protein sequenceShow/hide protein sequence
MVECLATLGSKPHENKLCPLFAFFQALNIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLASFGLDKLSPTLEFLKYIGLKDIDLQAIAVGYPEVLYCRSGDRLSPILIK
SIKHSIEPRINFLIEVMGRRIEEVAGYRTSFNIIAFQQHTLDFFFRAPPLSRIKISLFALYSLII