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PI0023057 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023057
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationchr11:9443425..9444097
RNA-Seq ExpressionPI0023057
SyntenyPI0023057
Gene Ontology termsGO:0015977 - carbon fixation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:1901576 - organic substance biosynthetic process (biological process)
GO:0009536 - plastid (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0016829 - lyase activity (molecular function)
InterPro domainsIPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal
IPR033966 - RuBisCO
IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6138380.1 hypothetical protein GIB67_037670 [Kingdonia uniflora]5.9e-5062.18Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSP----LAYACSDRD
        AVFARE GVPI+MHDYL  GFTANTSL+HYCRDNGL LHIHRAM AVIDRQ                       SG+      G       L  A     
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSP----LAYACSDRD

Query:  LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
        +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREA KWSPELAAACEVWKEI+FEFEAMDTL
Subjt:  LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

OMP10484.1 hypothetical protein CCACVL1_00945 [Corchorus capsularis]1.1e-5165.92Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGS-------------SASSFTGYSPLAYACSDRDLWR--------GDD
        AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                S         L  A     +W         GDD
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGS-------------SASSFTGYSPLAYACSDRDLWR--------GDD

Query:  SVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
        SVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNE+IREASKWSPELAAACEVWKEI+FEF+AMDTL
Subjt:  SVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

RWR97768.1 ribulose-15-bisphosphate carboxylase/oxygenase large subunit chloroplast [Cinnamomum micranthum f. kanehirae]9.1e-5164.84Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------SGSSASSFTGYSPLAYACSDRDLWR-------
        AVFARE G PI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                  G    + T    L  A     +W        
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------SGSSASSFTGYSPLAYACSDRDLWR-------

Query:  -GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDT
         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKEI+FEF AMDT
Subjt:  -GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDT

TKR74941.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Populus alba]9.1e-5162.83Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSAS-------------------------SFTGYSPLAYACSDRDLW
        A+FARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                               S  G  P+  A     +W
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSAS-------------------------SFTGYSPLAYACSDRDLW

Query:  R--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
                 GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKEI+FEFEAMDTL
Subjt:  R--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

VAH75199.1 unnamed protein product [Triticum turgidum subsp. durum]1.1e-4866.87Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHP
        AVFARE GVPI+MHDYL  GFTANT+LAHYCRDNGL LHIHRAM AVIDRQ         G  P+  A     +W         GDDSVL+FG GTLGHP
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHP

Query:  FFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
        +  NAPGA ANRVALEACVQA  EG DL   GNEIIR A KWSPELAAACEVWK I+FEFE +DT+
Subjt:  FFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

TrEMBL top hitse value%identityAlignment
A0A1R3KTQ0 Uncharacterized protein5.2e-5265.92Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGS-------------SASSFTGYSPLAYACSDRDLWR--------GDD
        AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                S         L  A     +W         GDD
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGS-------------SASSFTGYSPLAYACSDRDLWR--------GDD

Query:  SVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
        SVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNE+IREASKWSPELAAACEVWKEI+FEF+AMDTL
Subjt:  SVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

A0A3S3PU74 Ribulose bisphosphate carboxylase large chain4.4e-5164.84Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------SGSSASSFTGYSPLAYACSDRDLWR-------
        AVFARE G PI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                  G    + T    L  A     +W        
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------SGSSASSFTGYSPLAYACSDRDLWR-------

Query:  -GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDT
         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKEI+FEF AMDT
Subjt:  -GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDT

A0A446PLI2 Uncharacterized protein5.4e-4966.87Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHP
        AVFARE GVPI+MHDYL  GFTANT+LAHYCRDNGL LHIHRAM AVIDRQ         G  P+  A     +W         GDDSVL+FG GTLGHP
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHP

Query:  FFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
        +  NAPGA ANRVALEACVQA  EG DL   GNEIIR A KWSPELAAACEVWK I+FEFE +DT+
Subjt:  FFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

A0A4U5MY68 Ribulose bisphosphate carboxylase large chain4.4e-5162.83Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSAS-------------------------SFTGYSPLAYACSDRDLW
        A+FARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                               S  G  P+  A     +W
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSAS-------------------------SFTGYSPLAYACSDRDLW

Query:  R--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
                 GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKEI+FEFEAMDTL
Subjt:  R--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

A0A7J7L730 Ribulose bisphosphate carboxylase large chain2.9e-5062.18Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSP----LAYACSDRD
        AVFARE GVPI+MHDYL  GFTANTSL+HYCRDNGL LHIHRAM AVIDRQ                       SG+      G       L  A     
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSP----LAYACSDRD

Query:  LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL
        +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREA KWSPELAAACEVWKEI+FEFEAMDTL
Subjt:  LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

SwissProt top hitse value%identityAlignment
A4GG89 Ribulose bisphosphate carboxylase large chain9.5e-5155.16Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--
        AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                       SG+      G   +     D  RD  
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--

Query:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS
                                      +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWS
Subjt:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS

Query:  PELAAACEVWKEIQFEFEAMDTL
        PELAAACEVWKEI+FEFEAMDTL
Subjt:  PELAAACEVWKEIQFEFEAMDTL

P28442 Ribulose bisphosphate carboxylase large chain (Fragment)9.5e-5155.16Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--
        AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                       SG+      G   +     D  RD  
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--

Query:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS
                                      +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWS
Subjt:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS

Query:  PELAAACEVWKEIQFEFEAMDTL
        PELAAACEVWKEI+FEFEAMDTL
Subjt:  PELAAACEVWKEIQFEFEAMDTL

Q05992 Ribulose bisphosphate carboxylase large chain (Fragment)9.5e-5155.16Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--
        AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                       SG+      G   +     D  RD  
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--

Query:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS
                                      +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWS
Subjt:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS

Query:  PELAAACEVWKEIQFEFEAMDTL
        PELAAACEVWKEI+FEFEAMDTL
Subjt:  PELAAACEVWKEIQFEFEAMDTL

Q31983 Ribulose bisphosphate carboxylase large chain (Fragment)1.2e-5054.71Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--
        A+FARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                       SG+      G   +     D  RD  
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--

Query:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS
                                      +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWS
Subjt:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS

Query:  PELAAACEVWKEIQFEFEAMDTL
        PELAAACEVWKEI+FEFEAMDTL
Subjt:  PELAAACEVWKEIQFEFEAMDTL

Q32041 Ribulose bisphosphate carboxylase large chain (Fragment)1.2e-5054.71Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--
        AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ                       SG+      G   +     D  RD  
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ-----------------------SGSSASSFTGYSPLAYACSD--RD--

Query:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS
                                      +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWS
Subjt:  ------------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS

Query:  PELAAACEVWKEIQFEFEAMDTL
        PELAAACE+WKEI+FEFEAMDTL
Subjt:  PELAAACEVWKEIQFEFEAMDTL

Arabidopsis top hitse value%identityAlignment
AT2G07732.1 Ribulose bisphosphate carboxylase large chain, catalytic domain1.0e-0786.21Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAH
        AVFARE GVPI+MHDYL  GFTANTSLAH
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAH

ATCG00490.1 ribulose-bisphosphate carboxylases1.0e-4752.02Show/hide
Query:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSG------------------------------SSASSFTGYSPLA---Y
        AVFARE GVPI+MHDYL  GFTANTSL+HYCRDNGL LHIHRAM AVIDRQ                                    S  G+  L    Y
Subjt:  AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSG------------------------------SSASSFTGYSPLA---Y

Query:  ACSDRD------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS
           DR                         +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREA KWS
Subjt:  ACSDRD------------------------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWS

Query:  PELAAACEVWKEIQFEFEAMDTL
        PELAAACEVWKEI F F  +D L
Subjt:  PELAAACEVWKEIQFEFEAMDTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTATTTGCCAGAGAAGACGGAGTTCCTATCCTAATGCATGACTACTTAAGAAGAGGGTTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTTT
ATTTCTTCACATTCACCGCGCAATGGATGCAGTTATTGATAGACAATCAGGGTCTTCTGCCTCTAGCTTCACGGGGTATTCGCCTTTGGCATATGCCTGCTCTGACCGAG
ATCTTTGGAGAGGAGATGATTCCGTACTAGAATTCGGTAGAGGAACTTTAGGGCATCCTTTTTTTTTAAATGCACCCGGTGCCGTAGCTAATCGCGTAGCTCTAGAAGCA
TGTGTACAAGCTTGTATTGAGGGACGTGATCTGGGTAATGAAATTATCCGTGAAGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAAATTCA
ATTTGAATTCGAAGCAATGGATACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTATTTGCCAGAGAAGACGGAGTTCCTATCCTAATGCATGACTACTTAAGAAGAGGGTTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTTT
ATTTCTTCACATTCACCGCGCAATGGATGCAGTTATTGATAGACAATCAGGGTCTTCTGCCTCTAGCTTCACGGGGTATTCGCCTTTGGCATATGCCTGCTCTGACCGAG
ATCTTTGGAGAGGAGATGATTCCGTACTAGAATTCGGTAGAGGAACTTTAGGGCATCCTTTTTTTTTAAATGCACCCGGTGCCGTAGCTAATCGCGTAGCTCTAGAAGCA
TGTGTACAAGCTTGTATTGAGGGACGTGATCTGGGTAATGAAATTATCCGTGAAGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAAATTCA
ATTTGAATTCGAAGCAATGGATACTTTGTAA
Protein sequenceShow/hide protein sequence
MAVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFTGYSPLAYACSDRDLWRGDDSVLEFGRGTLGHPFFLNAPGAVANRVALEA
CVQACIEGRDLGNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL