; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023060 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023060
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:21760236..21760607
RNA-Seq ExpressionPI0023060
SyntenyPI0023060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032169.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.2e-2270.53Show/hide
Query:  MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA
        M+T SSS  TPT VSLPPISSIIAPTPKDHNEVL NSI +  NSKNPNSTNVYPLDTGS+ VLQD D P       S MGNY++SSSM  S ID+
Subjt:  MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA

KAA0045110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.8e-0537.5Show/hide
Query:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP
        S S   +P+ V  PP  SI+   P +HN V H   P T N+   N+  +YPL+TG     +++   S    TI L      +++   SP   L   N HP
Subjt:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP

Query:  MMTRGKCDIFKSKAYLVDYT
        M+TR K  IFK KA L+DYT
Subjt:  MMTRGKCDIFKSKAYLVDYT

KAA0067212.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]3.7e-0737.5Show/hide
Query:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP
        S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   NST VYPL+TG+    +D         + S M     + S +++    L + + HP
Subjt:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP

Query:  MMTRGKCDIFKSKAYLVDYT
        M+T+ K DIFK KA+L+DYT
Subjt:  MMTRGKCDIFKSKAYLVDYT

KGN54718.1 hypothetical protein Csa_012961 [Cucumis sativus]1.1e-1966.32Show/hide
Query:  SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI
        SSS P PT VS PPISSIIAPTPKD NEVLHNS+PV  NS+N  STNVYPLDT S+ +LQ+ D P       S MG YE+SSSM  S +DALHAI
Subjt:  SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI

TYK18915.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-0636.67Show/hide
Query:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP
        S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   N T VYPL+TG+    +D         + S M     + S +++    L + + HP
Subjt:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP

Query:  MMTRGKCDIFKSKAYLVDYT
        M+T+ K DIFK KA+L+DYT
Subjt:  MMTRGKCDIFKSKAYLVDYT

TrEMBL top hitse value%identityAlignment
A0A0A0KYW3 Uncharacterized protein5.4e-2066.32Show/hide
Query:  SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI
        SSS P PT VS PPISSIIAPTPKD NEVLHNS+PV  NS+N  STNVYPLDT S+ +LQ+ D P       S MG YE+SSSM  S +DALHAI
Subjt:  SSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAI

A0A5A7VFQ6 Retrotransposon protein, putative, Ty1-copia subclass1.8e-0737.5Show/hide
Query:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP
        S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   NST VYPL+TG+    +D         + S M     + S +++    L + + HP
Subjt:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP

Query:  MMTRGKCDIFKSKAYLVDYT
        M+T+ K DIFK KA+L+DYT
Subjt:  MMTRGKCDIFKSKAYLVDYT

A0A5D3CTU1 Putative mitochondrial protein4.4e-2270.53Show/hide
Query:  MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA
        M+T SSS  TPT VSLPPISSIIAPTPKDHNEVL NSI +  NSKNPNSTNVYPLDTGS+ VLQD D P       S MGNY++SSSM  S ID+
Subjt:  MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDA

A0A5D3D5W0 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-0736.67Show/hide
Query:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP
        S SS P   NV  PP+ SII  +  +HNE   ++  V+ N+   N T VYPL+TG+    +D         + S M     + S +++    L + + HP
Subjt:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP

Query:  MMTRGKCDIFKSKAYLVDYT
        M+T+ K DIFK KA+L+DYT
Subjt:  MMTRGKCDIFKSKAYLVDYT

A0A5D3DJG8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.8e-0537.5Show/hide
Query:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP
        S S   +P+ V  PP  SI+   P +HN V H   P T N+   N+  +YPL+TG     +++   S    TI L      +++   SP   L   N HP
Subjt:  SSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHP

Query:  MMTRGKCDIFKSKAYLVDYT
        M+TR K  IFK KA L+DYT
Subjt:  MMTRGKCDIFKSKAYLVDYT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTC
TATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGC
CAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGT
GACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACATCCTCATCTTCCTTTCCCACTCCGACTAATGTCTCTCTTCCACCTATTTCTTCTATCATTGCACCCACCCCCAAGGACCATAATGAAGTTTTGCACAACTC
TATTCCAGTTACTACTAATTCTAAGAATCCAAATTCTACTAATGTGTATCCTTTAGATACAGGTTCTCATGTAGTTTTGCAGGACCAAGACTATCCTTCTTCCCCTATGC
CAACTATCTCATTGATGGGGAATTATGAATCTTCATCCTCTATGGTTCATTCCCCTATTGATGCTCTTCATGCTATCAATGCTCATCCTATGATGACTCGTGGTAAGTGT
GACATTTTTAAATCTAAGGCATACTTAGTTGATTATACCTAA
Protein sequenceShow/hide protein sequence
MSTSSSSFPTPTNVSLPPISSIIAPTPKDHNEVLHNSIPVTTNSKNPNSTNVYPLDTGSHVVLQDQDYPSSPMPTISLMGNYESSSSMVHSPIDALHAINAHPMMTRGKC
DIFKSKAYLVDYT