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PI0023074 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023074
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr06:21406548..21406982
RNA-Seq ExpressionPI0023074
SyntenyPI0023074
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035974.1 hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa]8.8e-2447.22Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKRSKEEEVRSVEERRTKHTKVGVSQ
        ++V +Y+KKFT LAKY   ++DS+ +RCR F  GLR + RTPV   V    + +LV+ TL VEKS+  G +  +S  S EEE  S+E ++ K     VSQ
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKRSKEEEVRSVEERRTKHTKVGVSQ

Query:  GSRWSRNKKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQRECQ
         S WS +KK  C ECG++HSG CRR +I CF+C K+ HY+ E Q
Subjt:  GSRWSRNKKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQRECQ

KAA0042309.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1939.62Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y   I+ S+ +RCR FERGLR E RTPVT    W  F +LVE  L VE+S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       ++ PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

KAA0054814.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1839.62Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y    V S+ +RCR FE+GLR E RTPVT    W  F +LVE  L VE+S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       K+ PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.9e-2040.25Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y   IV S+ +RCR FERGLR E RTPVT    W  F +LVE  L VE+S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       +++PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

KAA0061627.1 putative polyprotein [Cucumis melo var. makuwa]3.8e-1939.62Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y   IV S+ +RCR FERGLR E RTPVT    W  F +LVE +L V++S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       ++ PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

TrEMBL top hitse value%identityAlignment
A0A5A7TLU6 Reverse transcriptase1.4e-1939.62Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y   I+ S+ +RCR FERGLR E RTPVT    W  F +LVE  L VE+S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       ++ PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

A0A5A7UI35 Reverse transcriptase9.2e-1939.62Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y    V S+ +RCR FE+GLR E RTPVT    W  F +LVE  L VE+S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       K+ PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

A0A5A7V0R0 Reverse transcriptase2.9e-2040.25Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y   IV S+ +RCR FERGLR E RTPVT    W  F +LVE  L VE+S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       +++PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

A0A5A7V411 Putative polyprotein1.8e-1939.62Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG
        ++VA+YE+K+T L++Y   IV S+ +RCR FERGLR E RTPVT    W  F +LVE +L V++S+T+ K  V   R  S     R  E+RR T    + 
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKR--SKEEEVRSVEERR-TKHTKVG

Query:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC
          Q      G + SRN       ++ PC  CGR H G C      C++CG+ GH++++C
Subjt:  VSQ------GSRWSRN-------KKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQREC

A0A5D3E3Q3 Retrotrans_gag domain-containing protein4.3e-2447.22Show/hide
Query:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKRSKEEEVRSVEERRTKHTKVGVSQ
        ++V +Y+KKFT LAKY   ++DS+ +RCR F  GLR + RTPV   V    + +LV+ TL VEKS+  G +  +S  S EEE  S+E ++ K     VSQ
Subjt:  MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKRSKEEEVRSVEERRTKHTKVGVSQ

Query:  GSRWSRNKKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQRECQ
         S WS +KK  C ECG++HSG CRR +I CF+C K+ HY+ E Q
Subjt:  GSRWSRNKKSPCVECGRKHSGVCRRNTIGCFKCGKEGHYQRECQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTGGCAGATTATGAGAAAAAGTTTACAAGTTTAGCGAAGTATGTATCAACTATAGTGGATTCAAAGAAAGAAAGGTGTAGGCATTTTGAGAGAGGGTTAAGGCA
GGAATTTAGAACGCCAGTGACGACATGTGTTGCTTGGTATAAATTTTTTAAACTTGTTGAGGTGACATTATGCGTAGAGAAGAGTTTGACAAAAGGAAAGGAAATGGTGA
CATCTAAGCGTAGTAAAGAAGAGGAAGTGAGGAGTGTGGAGGAAAGGAGAACCAAGCACACTAAGGTGGGTGTTAGCCAAGGATCGCGTTGGAGTAGGAATAAAAAATCT
CCCTGTGTGGAGTGTGGTCGGAAGCATTCAGGGGTTTGTAGGCGGAATACTATAGGGTGCTTCAAGTGTGGGAAGGAAGGTCATTATCAAAGAGAGTGTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGTGGCAGATTATGAGAAAAAGTTTACAAGTTTAGCGAAGTATGTATCAACTATAGTGGATTCAAAGAAAGAAAGGTGTAGGCATTTTGAGAGAGGGTTAAGGCA
GGAATTTAGAACGCCAGTGACGACATGTGTTGCTTGGTATAAATTTTTTAAACTTGTTGAGGTGACATTATGCGTAGAGAAGAGTTTGACAAAAGGAAAGGAAATGGTGA
CATCTAAGCGTAGTAAAGAAGAGGAAGTGAGGAGTGTGGAGGAAAGGAGAACCAAGCACACTAAGGTGGGTGTTAGCCAAGGATCGCGTTGGAGTAGGAATAAAAAATCT
CCCTGTGTGGAGTGTGGTCGGAAGCATTCAGGGGTTTGTAGGCGGAATACTATAGGGTGCTTCAAGTGTGGGAAGGAAGGTCATTATCAAAGAGAGTGTCAATAG
Protein sequenceShow/hide protein sequence
MTVADYEKKFTSLAKYVSTIVDSKKERCRHFERGLRQEFRTPVTTCVAWYKFFKLVEVTLCVEKSLTKGKEMVTSKRSKEEEVRSVEERRTKHTKVGVSQGSRWSRNKKS
PCVECGRKHSGVCRRNTIGCFKCGKEGHYQRECQ