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PI0023083 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023083
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:13524891..13525259
RNA-Seq ExpressionPI0023083
SyntenyPI0023083
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047716.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-2067.82Show/hide
Query:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEV
        DGN++E PTMYSQGLDMS DDIMGT P RAS+GR  S+GSKRK G Q  E  +IIRSAMEYAN  L  IA+W   QRQDA+VT  EV
Subjt:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEV

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-2163.74Show/hide
Query:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL
        DGND+E P MYSQG+DM  DDIMGT P R++EGR GSSGSKRK G QA E  EIIR+ ME++N++L+AI EW   QRQDA+    EVV+QL
Subjt:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL

KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-1861.36Show/hide
Query:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL
        D +FP MYSQGL+MSPDD+MGT  +R SE R  SSGSKRK    A+++ +I+R+A+EY NEQL  IAEWP  QRQ+A+ TR EVV+QL
Subjt:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL

TYK08370.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-2155.96Show/hide
Query:  DYEVGLPCWVERACRVRYISHYDGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQ
        ++ +G    + R       ++ DGN++E PTMYSQGLDMS DDIMGT P RAS+GR  S+GSKRK G Q  E  +IIRSAMEYAN  L  IA+W   QRQ
Subjt:  DYEVGLPCWVERACRVRYISHYDGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQ

Query:  DANVTRAEV
        DA+VT  EV
Subjt:  DANVTRAEV

TYK10954.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-1860.23Show/hide
Query:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL
        D +FP MYSQGL+MSPDD+MGT  +R SE R  SSGSKRK    A+++ +I+R+A+EY NEQL  IAEWP  QRQ+A+ TR EVV++L
Subjt:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL

TrEMBL top hitse value%identityAlignment
A0A5A7U0G0 Retrotransposon protein4.9e-2167.82Show/hide
Query:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEV
        DGN++E PTMYSQGLDMS DDIMGT P RAS+GR  S+GSKRK G Q  E  +IIRSAMEYAN  L  IA+W   QRQDA+VT  EV
Subjt:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEV

A0A5A7V469 Retrotransposon protein7.5e-2263.74Show/hide
Query:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL
        DGND+E P MYSQG+DM  DDIMGT P R++EGR GSSGSKRK G QA E  EIIR+ ME++N++L+AI EW   QRQDA+    EVV+QL
Subjt:  DGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL

A0A5A7VBC5 Retrotransposon protein1.0e-1861.36Show/hide
Query:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL
        D +FP MYSQGL+MSPDD+MGT  +R SE R  SSGSKRK    A+++ +I+R+A+EY NEQL  IAEWP  QRQ+A+ TR EVV+QL
Subjt:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL

A0A5D3CAJ4 Retrotransposon protein1.3e-2155.96Show/hide
Query:  DYEVGLPCWVERACRVRYISHYDGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQ
        ++ +G    + R       ++ DGN++E PTMYSQGLDMS DDIMGT P RAS+GR  S+GSKRK G Q  E  +IIRSAMEYAN  L  IA+W   QRQ
Subjt:  DYEVGLPCWVERACRVRYISHYDGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQ

Query:  DANVTRAEV
        DA+VT  EV
Subjt:  DANVTRAEV

A0A5D3CIF5 Retrotransposon protein3.0e-1860.23Show/hide
Query:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL
        D +FP MYSQGL+MSPDD+MGT  +R SE R  SSGSKRK    A+++ +I+R+A+EY NEQL  IAEWP  QRQ+A+ TR EVV++L
Subjt:  DVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQDANVTRAEVVKQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCAGGTTGCGATGAGTCATGCGATTATGAAGTAGGTTTGCCATGTTGGGTCGAACGTGCCTGCAGGGTACGATATATTTCCCATTATGACGGGAACGATGTGGA
GTTCCCCACGATGTACAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGCACACTACCCAGTCGGGCGTCTGAGGGTAGGGTGGGTTCCAGTGGTTCGAAGAGGA
AATGGGGAGAACAGGCATCCGAGGCGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAACGAGCAGTTGGAGGCCATAGCAGAATGGCCCAAAGAACAACGCCAAGAT
GCAAACGTGACACGTGCGGAAGTCGTTAAACAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCAGGTTGCGATGAGTCATGCGATTATGAAGTAGGTTTGCCATGTTGGGTCGAACGTGCCTGCAGGGTACGATATATTTCCCATTATGACGGGAACGATGTGGA
GTTCCCCACGATGTACAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGCACACTACCCAGTCGGGCGTCTGAGGGTAGGGTGGGTTCCAGTGGTTCGAAGAGGA
AATGGGGAGAACAGGCATCCGAGGCGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAACGAGCAGTTGGAGGCCATAGCAGAATGGCCCAAAGAACAACGCCAAGAT
GCAAACGTGACACGTGCGGAAGTCGTTAAACAATTGTAG
Protein sequenceShow/hide protein sequence
MKAGCDESCDYEVGLPCWVERACRVRYISHYDGNDVEFPTMYSQGLDMSPDDIMGTLPSRASEGRVGSSGSKRKWGEQASEAAEIIRSAMEYANEQLEAIAEWPKEQRQD
ANVTRAEVVKQL