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PI0023158 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023158
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:11948515..11949220
RNA-Seq ExpressionPI0023158
SyntenyPI0023158
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046050.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-1237.87Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS-------------------------DSVGTTNTN---------------ALSLNT-----
        MMAE++SGCNIQ   TID RIKTLKRT+QAI EM G +CS                          S G  N +               A+   T     
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS-------------------------DSVGTTNTN---------------ALSLNT-----

Query:  ------RGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIR---PDWPKKQHAAEDEYGAEVVKQLQDI
              RG++GF V+D +D+EI TMYS+GLDMSP  + G R    +WP  Q         E V+QLQ I
Subjt:  ------RGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIR---PDWPKKQHAAEDEYGAEVVKQLQDI

KAA0049673.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-1241.38Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRG--PTCSDSV-----------------------GTTNTNALSLNTRGFDGFPVNDAHDLEITTMY
        MMAEKLSGC++Q    IDCRIK+LKRT+QAIAEMRG  P   D +                         T  +  S    G++GF + D +D+E  +MY
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRG--PTCSDSV-----------------------GTTNTNALSLNTRGFDGFPVNDAHDLEITTMY

Query:  SQGLDMSPNELMGIRP
        SQG+DMS +++   RP
Subjt:  SQGLDMSPNELMGIRP

KAA0062209.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-1244.9Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCSDSVGTTNTNALSLNTRG-------FDGFPVNDAHDLEITTMYSQGLDMSPNELMGIRP
        MMAEKL GC ++ +  IDCRIKTLK+T+Q IAEMRGP CS   G T   A +    G       +D F + D ++ E   +YSQG+D+S +++   RP
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCSDSVGTTNTNALSLNTRG-------FDGFPVNDAHDLEITTMYSQGLDMSPNELMGIRP

KAA0062570.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-1347.42Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCSDSVGTTNTNALSL------NTRGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIRP
        MMAEKL GC ++    IDCRIKTLKRT+QAIA+MRGP CS   G T   A +          G+DGF + D ++ E   +YSQG+D+S +++   RP
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCSDSVGTTNTNALSL------NTRGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIRP

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.6e-1533.02Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS------------------DSVGTTNTNALSLNTRGF------------------------
        MMAEKL G NIQ   TIDC +K+LK+TY AIAEMRGP+CS                  DS   ++  A  L  + F                        
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS------------------DSVGTTNTNALSLNTRGF------------------------

Query:  -----------DGFPVNDAHDLEITTMYSQGLDMSPNELMGIR-------------------------------------------PDWPKKQHAAEDEY
                   D  P+ D+HD +I TMYSQG+ MSP+E+ GIR                                            DWPK++ A E E 
Subjt:  -----------DGFPVNDAHDLEITTMYSQGLDMSPNELMGIR-------------------------------------------PDWPKKQHAAEDEY

Query:  GAEVVKQLQDIP
         A+VVKQLQDIP
Subjt:  GAEVVKQLQDIP

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859537.7e-1633.02Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS------------------DSVGTTNTNALSLNTRGF------------------------
        MMAEKL G NIQ   TIDC +K+LK+TY AIAEMRGP+CS                  DS   ++  A  L  + F                        
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS------------------DSVGTTNTNALSLNTRGF------------------------

Query:  -----------DGFPVNDAHDLEITTMYSQGLDMSPNELMGIR-------------------------------------------PDWPKKQHAAEDEY
                   D  P+ D+HD +I TMYSQG+ MSP+E+ GIR                                            DWPK++ A E E 
Subjt:  -----------DGFPVNDAHDLEITTMYSQGLDMSPNELMGIR-------------------------------------------PDWPKKQHAAEDEY

Query:  GAEVVKQLQDIP
         A+VVKQLQDIP
Subjt:  GAEVVKQLQDIP

A0A5A7TSD1 Retrotransposon protein7.9e-1337.87Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS-------------------------DSVGTTNTN---------------ALSLNT-----
        MMAE++SGCNIQ   TID RIKTLKRT+QAI EM G +CS                          S G  N +               A+   T     
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS-------------------------DSVGTTNTN---------------ALSLNT-----

Query:  ------RGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIR---PDWPKKQHAAEDEYGAEVVKQLQDI
              RG++GF V+D +D+EI TMYS+GLDMSP  + G R    +WP  Q         E V+QLQ I
Subjt:  ------RGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIR---PDWPKKQHAAEDEYGAEVVKQLQDI

A0A5A7U0H7 Retrotransposon protein7.7e-1633.02Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS------------------DSVGTTNTNALSLNTRGF------------------------
        MMAEKL G NIQ   TIDC +K+LK+TY AIAEMRGP+CS                  DS   ++  A  L  + F                        
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCS------------------DSVGTTNTNALSLNTRGF------------------------

Query:  -----------DGFPVNDAHDLEITTMYSQGLDMSPNELMGIR-------------------------------------------PDWPKKQHAAEDEY
                   D  P+ D+HD +I TMYSQG+ MSP+E+ GIR                                            DWPK++ A E E 
Subjt:  -----------DGFPVNDAHDLEITTMYSQGLDMSPNELMGIR-------------------------------------------PDWPKKQHAAEDEY

Query:  GAEVVKQLQDIP
         A+VVKQLQDIP
Subjt:  GAEVVKQLQDIP

A0A5A7U1E5 Retrotransposon protein6.1e-1341.38Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRG--PTCSDSV-----------------------GTTNTNALSLNTRGFDGFPVNDAHDLEITTMY
        MMAEKLSGC++Q    IDCRIK+LKRT+QAIAEMRG  P   D +                         T  +  S    G++GF + D +D+E  +MY
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRG--PTCSDSV-----------------------GTTNTNALSLNTRGFDGFPVNDAHDLEITTMY

Query:  SQGLDMSPNELMGIRP
        SQG+DMS +++   RP
Subjt:  SQGLDMSPNELMGIRP

A0A5A7V5R4 Retrotransposon protein2.7e-1347.42Show/hide
Query:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCSDSVGTTNTNALSL------NTRGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIRP
        MMAEKL GC ++    IDCRIKTLKRT+QAIA+MRGP CS   G T   A +          G+DGF + D ++ E   +YSQG+D+S +++   RP
Subjt:  MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCSDSVGTTNTNALSL------NTRGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAGAGAAGCTTTCGGGCTGTAACATCCAGGGGGTTCCGACAATAGATTGTCGGATCAAAACCCTTAAGAGAACCTACCAGGCGATCGCAGAAATGCGAGGGCC
AACATGCAGTGATTCCGTTGGAACGACGAATACCAATGCATTATCGCTGAACACGAGGGGGTTCGATGGTTTTCCAGTCAATGATGCTCATGATCTGGAGATCACGACGA
TGTATAGTCAGGGACTAGACATGTCACCTAATGAGCTCATGGGCATACGACCAGATTGGCCGAAAAAGCAACATGCAGCGGAGGACGAATATGGTGCAGAAGTCGTGAAA
CAGTTGCAGGATATCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCAGAGAAGCTTTCGGGCTGTAACATCCAGGGGGTTCCGACAATAGATTGTCGGATCAAAACCCTTAAGAGAACCTACCAGGCGATCGCAGAAATGCGAGGGCC
AACATGCAGTGATTCCGTTGGAACGACGAATACCAATGCATTATCGCTGAACACGAGGGGGTTCGATGGTTTTCCAGTCAATGATGCTCATGATCTGGAGATCACGACGA
TGTATAGTCAGGGACTAGACATGTCACCTAATGAGCTCATGGGCATACGACCAGATTGGCCGAAAAAGCAACATGCAGCGGAGGACGAATATGGTGCAGAAGTCGTGAAA
CAGTTGCAGGATATCCCTTAA
Protein sequenceShow/hide protein sequence
MMAEKLSGCNIQGVPTIDCRIKTLKRTYQAIAEMRGPTCSDSVGTTNTNALSLNTRGFDGFPVNDAHDLEITTMYSQGLDMSPNELMGIRPDWPKKQHAAEDEYGAEVVK
QLQDIP