; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023160 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023160
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionmediator of RNA polymerase II transcription subunit 30
Genome locationchr02:24977932..24980672
RNA-Seq ExpressionPI0023160
SyntenyPI0023160
Gene Ontology termsGO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034568 - Mediator of RNA polymerase II transcription subunit 30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]1.1e-9698.99Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT ATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSSGGG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]3.4e-9597.98Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT ATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]9.4e-8587.88Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST   ATS L+IASPNGPS HS NGVVNGDASSEST+HH D+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]6.1e-9293.94Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT  TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]2.6e-9094.95Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST T ATSGL IASPNGPSSHS NGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKA AYESGTSG  SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
TrEMBL top hitse value%identityAlignment
A0A0A0LNW4 Uncharacterized protein5.2e-9798.99Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT ATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSSGGG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 301.7e-9597.98Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT ATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 301.7e-9597.98Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT ATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 302.9e-9293.94Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT  TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 302.9e-9293.94Show/hide
Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT  TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
SwissProt top hitse value%identityAlignment
Q9FMV4 Mediator of RNA polymerase II transcription subunit 304.4e-4557.22Show/hide
Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGG--ALEEA
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+       NG +  SA+      A+ + TSHH++S+GGGG G  G   L+EA
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGG--ALEEA

Query:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
         +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Arabidopsis top hitse value%identityAlignment
AT5G63480.1 unknown protein3.2e-4657.22Show/hide
Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGG--ALEEA
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+       NG +  SA+      A+ + TSHH++S+GGGG G  G   L+EA
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGG--ALEEA

Query:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
         +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGAAATCCACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATCCT
CTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCATGGCTACTTCTGGTTTAACAATTGCCAGCCCAAATGGTCCATCTT
CGCATTCTGCTAATGGAGTTGTAAACGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAG
GCACGTGTTCGCTATAAAAACTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATC
GCCTGCAGACCAATCCGAGATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAG
ATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA
mRNA sequenceShow/hide mRNA sequence
GATTACAAATGGGAGTTAGGGTTTCATGAACATCACAAGCTCAAGTGTGATTGAAAGTTGGAATTGGGAATTTTGAAGATTCCGAACCCTCTCTTTATAAATTCGGTGGA
TTTTTTATTGTAGTAGCATCACAGGAGCATCGATTTTTTCTTCTGGAAACGTATTATGGAAGAGAAATCCACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTG
CAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCA
ACGGCAACCATGGCTACTTCTGGTTTAACAATTGCCAGCCCAAATGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAACGGTGATGCTAGTTCCGAAAGCACTAGCCA
TCACACCGATTCCAGCGGCGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCACGTGTTCGCTATAAAAACTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAA
TCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCCGAGATTGATAAGTTGGAACAACACCTCTCTAATCTCAGA
AAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGT
GCTAGCTTTGACTTTTGAGTCTCCTCGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGCTCTGTTTCTTGAAAAGATGAGTTGTTATTAGAACGTTTCTTTGCATCTC
TTCAATGAAAGTAGTGATTATACAAATTTGCCATTGTCTGTAAATTTTCAATATAGGTAAGGCTCTGATAAATCTAGTACCAGAGGAATTAAAGGTTCAATTACGTGAGT
TTTATCATACAAGTCATCTACAAAAACCCTTTAGACACTCTTAAAACACACTTGGATGCACACAAAAACAACCATATAGCTTCAGCGTATGAAACATAGTTACACTTGCT
TTCAACTTCTAAAATCTAGCTTGTAAGAAATGAAAATTTATGTGGCCATATTAGGTTTTATACCCTCGAAGAATACATTCAGTTGTGGATTGATGATCTTGTAGTAAGGG
AAGATCTCATATCCACAATGGCTGATTCATCTGCACCCAACTTGATGGCCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCGTGTGCTTCTTTA
ACGGTCATCTTCTCGCTTATTTCATTAGGGAAACTACTCAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACGACCTCGCTCTGAAACTCAGATAATCCACTGTT
TTCATTTGCTTCTGTTTTCCTCAAAGGTGTCACTTCAGGCAAGGTTACTGCAACAAGTGTTTGTGAAATTAACAACAATACATAATTTCAATTGGGAAAATGTCGATGAG
TCTCAAACCGGTATAGATTGAGGATAAGATACCTGGACAGTCGGTTCGTGGCGAGGTTAACTGGTCAACGATGTCCTCAAATGTCCCAGCCCAAGCATCTCTGTGAGTCA
GGAAGTTAGAGGGGATATTGAATATTTTCTTTATGGTAGCAGGGATTGAGGAATGCTCAAACTCAGAGTTCGGAGTTGGACCCTTTGGACTGCTTATTACTGCAAAACAA
AACAGAGTTTAGAGCTATAAACACACCCCAGAAAGGGAAATGGCTAAACATTTATGGACGGTTGTAAAGGCTATTGATTCAGAGGAGAAGAGTGGGTGGCAAGAACTTGG
CTTACCAGTTCCTTTCTTAATCCAAGGC
Protein sequenceShow/hide protein sequence
MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEE
ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV