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PI0023178 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023178
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr11:15389093..15390783
RNA-Seq ExpressionPI0023178
SyntenyPI0023178
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041933.1 hypothetical protein E6C27_scaffold67G003500 [Cucumis melo var. makuwa]4.4e-2337.06Show/hide
Query:  LNAEEFSVEISGRAVSFNAEAINALYDLPNDAETPE--HEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHD
        +N EE    + G  V F  + INA + L    ET E  H    NP ++    AL+ +AW G  W++T+TR+Y L+ H L IE  +WL F KKKI  TRHD
Subjt:  LNAEEFSVEISGRAVSFNAEAINALYDLPNDAETPE--HEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHD

Query:  STINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIPGGL
          I++E  ML+ CIM +  +N+G++I+  I++W++   GA PF   IE   +K    L+ +  + +  G+
Subjt:  STINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIPGGL

KAA0049609.1 transposase [Cucumis melo var. makuwa]1.5e-3141.94Show/hide
Query:  PKKQREVVGPSKGK--KKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVT
        PKK +   G S+ +  +K  + G  EH      P   E +++ +    V F  E IN LYDLPND    P    +V+  +  A++ +++I WP A    T
Subjt:  PKKQREVVGPSKGK--KKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVT

Query:  LTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP
         TR+ QL+PHQLTIEA VWLFF+KKKIF T HDSTI  E A++L CI  KK  NLG ++    +SWMR PK A PFP+T++ LC+K +       P  IP
Subjt:  LTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP

Query:  -----GGLCNQSRELPP
             GG CN   +  P
Subjt:  -----GGLCNQSRELPP

KAA0057652.1 hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa]4.4e-2341.55Show/hide
Query:  ISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLL
        + G+ V F  +AIN L+ L  +A+  EH    NP ++   +AL+ +AWP   W++  T KYQL+   L  EAI+WL F+K  I  TRHDSTI++E  ML+
Subjt:  ISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLL

Query:  CCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVK
         CIM    VN+ ++I+  I++W++ P+   PF   IE LC+K
Subjt:  CCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVK

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-3147.27Show/hide
Query:  NAEEFSVEISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEV-TLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDST
        N  +  + I      FN E IN LY+ PNDAE    E V   TK +A+EAL+V+AWPG + EV  +  +YQLYPH LT +A VW+FF K KIF T +DST
Subjt:  NAEEFSVEISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEV-TLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDST

Query:  INLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP
        I+++  ++L CIM KK +NL ++I   I++WM  PK AMPFPS +E LC+K +  L       IP
Subjt:  INLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]3.4e-3142.93Show/hide
Query:  SKGKKKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQL
        SK  +  G+ G  EH      P   E +++ +    V F  E IN LYDLPND    P    +V+  +  A++ +++I WP A    T TR+ QL+PHQL
Subjt:  SKGKKKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQL

Query:  TIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP-----GGLCNQS
        TIEA VWLFF+KKKIF T HDSTI  E A++L CI  KK  NLG ++    +SWMR PK A PFP+T++ LC+K +       P  IP     GG CN  
Subjt:  TIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP-----GGLCNQS

Query:  RELPP
         +  P
Subjt:  RELPP

TrEMBL top hitse value%identityAlignment
A0A5A7U806 Transposase7.4e-3241.94Show/hide
Query:  PKKQREVVGPSKGK--KKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVT
        PKK +   G S+ +  +K  + G  EH      P   E +++ +    V F  E IN LYDLPND    P    +V+  +  A++ +++I WP A    T
Subjt:  PKKQREVVGPSKGK--KKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVT

Query:  LTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP
         TR+ QL+PHQLTIEA VWLFF+KKKIF T HDSTI  E A++L CI  KK  NLG ++    +SWMR PK A PFP+T++ LC+K +       P  IP
Subjt:  LTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP

Query:  -----GGLCNQSRELPP
             GG CN   +  P
Subjt:  -----GGLCNQSRELPP

A0A5A7V6M5 Gag/pol protein9.6e-3247.27Show/hide
Query:  NAEEFSVEISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEV-TLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDST
        N  +  + I      FN E IN LY+ PNDAE    E V   TK +A+EAL+V+AWPG + EV  +  +YQLYPH LT +A VW+FF K KIF T +DST
Subjt:  NAEEFSVEISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEV-TLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDST

Query:  INLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP
        I+++  ++L CIM KK +NL ++I   I++WM  PK AMPFPS +E LC+K +  L       IP
Subjt:  INLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP

A0A5D3CVL7 Uncharacterized protein1.6e-3142.93Show/hide
Query:  SKGKKKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQL
        SK  +  G+ G  EH      P   E +++ +    V F  E IN LYDLPND    P    +V+  +  A++ +++I WP A    T TR+ QL+PHQL
Subjt:  SKGKKKIGDSGPEEH------PLNAEEFSVEISGRAVSFNAEAINALYDLPND-AETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQL

Query:  TIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP-----GGLCNQS
        TIEA VWLFF+KKKIF T HDSTI  E A++L CI  KK  NLG ++    +SWMR PK A PFP+T++ LC+K +       P  IP     GG CN  
Subjt:  TIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIP-----GGLCNQS

Query:  RELPP
         +  P
Subjt:  RELPP

A0A5D3D2B5 Uncharacterized protein2.1e-2337.06Show/hide
Query:  LNAEEFSVEISGRAVSFNAEAINALYDLPNDAETPE--HEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHD
        +N EE    + G  V F  + INA + L    ET E  H    NP ++    AL+ +AW G  W++T+TR+Y L+ H L IE  +WL F KKKI  TRHD
Subjt:  LNAEEFSVEISGRAVSFNAEAINALYDLPNDAETPE--HEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHD

Query:  STINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIPGGL
          I++E  ML+ CIM +  +N+G++I+  I++W++   GA PF   IE   +K    L+ +  + +  G+
Subjt:  STINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVKVVSFLSAINPMPIPGGL

A0A5D3D7L3 Uncharacterized protein2.1e-2341.55Show/hide
Query:  ISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLL
        + G+ V F  +AIN L+ L  +A+  EH    NP ++   +AL+ +AWP   W++  T KYQL+   L  EAI+WL F+K  I  TRHDSTI++E  ML+
Subjt:  ISGRAVSFNAEAINALYDLPNDAETPEHEYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLL

Query:  CCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVK
         CIM    VN+ ++I+  I++W++ P+   PF   IE LC+K
Subjt:  CCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEALCVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGCGGACCTGAGCGAACAAGTGGAGGAGCTGACCGCGAAGTACAAGGCTTTAGAGCCAGAGAGAGACCTCGAGGTCATTGCTGAGGAACTCGAGGATGAGCTGGA
GGCGATGAGCCCAATTGAGCAAGGGCCACCGCCTAAAAAGCAAAGGGAGGTCGTCGGACCATCAAAAGGGAAAAAGAAAATTGGGGACTCTGGACCTGAAGAGCACCCAC
TCAATGCTGAGGAGTTTAGCGTGGAAATTAGTGGCAGGGCAGTGAGCTTCAACGCGGAGGCCATCAACGCTTTATACGACTTGCCCAACGATGCTGAAACGCCTGAGCAT
GAATATGTGGTCAACCCAACCAAGAAAATGGCACGTGAAGCATTAGAAGTCATCGCCTGGCCTGGGGCTATATGGGAAGTTACGCTGACGAGGAAATATCAACTTTATCC
ACACCAGTTGACCATAGAAGCAATTGTGTGGCTTTTCTTCATGAAAAAGAAGATATTTTCCACACGCCATGACAGCACCATCAACTTAGAGTCAGCGATGCTGCTCTGTT
GCATAATGACGAAGAAGCGCGTAAATCTTGGCGATCTAATAGCTACATTCATCATGTCCTGGATGCGAGCTCCCAAGGGTGCCATGCCCTTCCCATCAACCATCGAAGCC
CTCTGCGTGAAGGTCGTGTCTTTTCTAAGTGCCATCAACCCAATGCCCATCCCAGGCGGTCTGTGCAACCAATCAAGAGAACTCCCTCCAAAATCCAAAAAGAACCCAGC
CGCTCTCAACTGTCTAGCCATCTTTCGCCTATTCCATCACCTCAACCTTCGCCCATTCCATTCTCCCATCATTCATCTCTCCCTCATATTTCCTCACCCATCTCCGCACC
ACACATATCTCTCTGCCCTCCTTCCCTTCCACTCACAAAAAACGACAACTCCCATCCTTCCTCCCACTAAACCTTCCCCCAAGCGAGCTGATACATTATCACCTCTCATT
CTATCGCCCATCCTGGATCTCTCAAATCTCCCCAATGACCTACCCACGGCCGCCCCTGAGGTCGTTGAGGTGCCCCCACCCACCATCCACCTTGTAGACTCCCCATTGCG
GACCTCTCCAATTCTTATTCTTTCAGAGAAGGACGCCAACCCTGAAACTGGGGTCTGCAAATCACCACCGCCCGTTTTGGATACAGGAGACCATAGTGATCACCCACACA
TCCAAGGCAAAACACCTATCCTTGATGATGCTGGCGAGACAGCCTCCTCGGCGGATACTACCAACGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGCGGACCTGAGCGAACAAGTGGAGGAGCTGACCGCGAAGTACAAGGCTTTAGAGCCAGAGAGAGACCTCGAGGTCATTGCTGAGGAACTCGAGGATGAGCTGGA
GGCGATGAGCCCAATTGAGCAAGGGCCACCGCCTAAAAAGCAAAGGGAGGTCGTCGGACCATCAAAAGGGAAAAAGAAAATTGGGGACTCTGGACCTGAAGAGCACCCAC
TCAATGCTGAGGAGTTTAGCGTGGAAATTAGTGGCAGGGCAGTGAGCTTCAACGCGGAGGCCATCAACGCTTTATACGACTTGCCCAACGATGCTGAAACGCCTGAGCAT
GAATATGTGGTCAACCCAACCAAGAAAATGGCACGTGAAGCATTAGAAGTCATCGCCTGGCCTGGGGCTATATGGGAAGTTACGCTGACGAGGAAATATCAACTTTATCC
ACACCAGTTGACCATAGAAGCAATTGTGTGGCTTTTCTTCATGAAAAAGAAGATATTTTCCACACGCCATGACAGCACCATCAACTTAGAGTCAGCGATGCTGCTCTGTT
GCATAATGACGAAGAAGCGCGTAAATCTTGGCGATCTAATAGCTACATTCATCATGTCCTGGATGCGAGCTCCCAAGGGTGCCATGCCCTTCCCATCAACCATCGAAGCC
CTCTGCGTGAAGGTCGTGTCTTTTCTAAGTGCCATCAACCCAATGCCCATCCCAGGCGGTCTGTGCAACCAATCAAGAGAACTCCCTCCAAAATCCAAAAAGAACCCAGC
CGCTCTCAACTGTCTAGCCATCTTTCGCCTATTCCATCACCTCAACCTTCGCCCATTCCATTCTCCCATCATTCATCTCTCCCTCATATTTCCTCACCCATCTCCGCACC
ACACATATCTCTCTGCCCTCCTTCCCTTCCACTCACAAAAAACGACAACTCCCATCCTTCCTCCCACTAAACCTTCCCCCAAGCGAGCTGATACATTATCACCTCTCATT
CTATCGCCCATCCTGGATCTCTCAAATCTCCCCAATGACCTACCCACGGCCGCCCCTGAGGTCGTTGAGGTGCCCCCACCCACCATCCACCTTGTAGACTCCCCATTGCG
GACCTCTCCAATTCTTATTCTTTCAGAGAAGGACGCCAACCCTGAAACTGGGGTCTGCAAATCACCACCGCCCGTTTTGGATACAGGAGACCATAGTGATCACCCACACA
TCCAAGGCAAAACACCTATCCTTGATGATGCTGGCGAGACAGCCTCCTCGGCGGATACTACCAACGTCTAA
Protein sequenceShow/hide protein sequence
MFADLSEQVEELTAKYKALEPERDLEVIAEELEDELEAMSPIEQGPPPKKQREVVGPSKGKKKIGDSGPEEHPLNAEEFSVEISGRAVSFNAEAINALYDLPNDAETPEH
EYVVNPTKKMAREALEVIAWPGAIWEVTLTRKYQLYPHQLTIEAIVWLFFMKKKIFSTRHDSTINLESAMLLCCIMTKKRVNLGDLIATFIMSWMRAPKGAMPFPSTIEA
LCVKVVSFLSAINPMPIPGGLCNQSRELPPKSKKNPAALNCLAIFRLFHHLNLRPFHSPIIHLSLIFPHPSPHHTYLSALLPFHSQKTTTPILPPTKPSPKRADTLSPLI
LSPILDLSNLPNDLPTAAPEVVEVPPPTIHLVDSPLRTSPILILSEKDANPETGVCKSPPPVLDTGDHSDHPHIQGKTPILDDAGETASSADTTNV