; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023183 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023183
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr05:17999690..18000427
RNA-Seq ExpressionPI0023183
SyntenyPI0023183
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]2.5e-3461.98Show/hide
Query:  SSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNT
        SSYNQI  TLD +A NNEE D+D F ++RGGRG++EEGLD+NV+V  QGQMTAMNNLL+ M   QVNA  SS Q+V Q+DE+GC+    PH  D CPLN 
Subjt:  SSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNT

Query:  KTVAFVRNDPYSNTYNPGWKH
        + VA+V++DPYSNTYNP W++
Subjt:  KTVAFVRNDPYSNTYNPGWKH

KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]7.2e-2652.89Show/hide
Query:  MMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCP
        M++SSY QI+ TLD + +N++E  +DD       RGR++ G+D+NV+VALQGQ+T M  LL+SMA+SQV+A  + +QAV Q+DEM  VGC  PH TD C 
Subjt:  MMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCP

Query:  LNTKTVAFVRNDPYSNTYNPG
        LN +  A+V++ PYSNTYN G
Subjt:  LNTKTVAFVRNDPYSNTYNPG

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]1.3e-4054.78Show/hide
Query:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGN------YRGGRGRSEEGLDKNVVVALQGQMTA
        M+K CPH+ I EC+LM+ FYFGL+K T Q+A++VF  GM++SSYNQI+  LD MASN++E  ++ FG+       +G RGR E+G+D +++VALQGQ+  
Subjt:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGN------YRGGRGRSEEGLDKNVVVALQGQMTA

Query:  MNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDP
        M N+L+SMA+ QVN   SS+Q V Q++EMGCVGC  PHNT+ CPLNT+ VA+++NDP
Subjt:  MNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDP

KAA0066652.1 uncharacterized protein E6C27_scaffold979G00840 [Cucumis melo var. makuwa]2.9e-2746.9Show/hide
Query:  VVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDPYSNTYNPGWKHTLTLGGEEWINKIKGDKVVKVT
        +VAL  Q+  M  LL+ M + +VN   S +  V Q+ E+GCVGC GPHNTD CP NT+TVA+V+NDPY NTYN GW++ L          +KGDK+ K  
Subjt:  VVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDPYSNTYNPGWKHTLTLGGEEWINKIKGDKVVKVT

Query:  IVVRHLAITRGTKIIDHNI-PSINNNTLPLLHLHPHKWRTSSANT
        I  +HLAI +   +I H I P   N    LLHL P+ W+  S NT
Subjt:  IVVRHLAITRGTKIIDHNI-PSINNNTLPLLHLHPHKWRTSSANT

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]3.1e-2958.2Show/hide
Query:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLK
        +VKACP +GI EC+ M+VFYFGL+K T Q  + +FV GM++SSYNQI+ TLD M++N++E D+  FG+    RGR++EGLDK+VVV LQGQM AMNNLL+
Subjt:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLK

Query:  SMAISQVNATDSSIQAVNQLDE
        SM +SQVNA ++ I AV Q+++
Subjt:  SMAISQVNATDSSIQAVNQLDE

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein1.5e-2958.2Show/hide
Query:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLK
        +VKACP +GI EC+ M+VFYFGL+K T Q  + +FV GM++SSYNQI+ TLD M++N++E D+  FG+    RGR++EGLDK+VVV LQGQM AMNNLL+
Subjt:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLK

Query:  SMAISQVNATDSSIQAVNQLDE
        SM +SQVNA ++ I AV Q+++
Subjt:  SMAISQVNATDSSIQAVNQLDE

A0A5A7VE68 Uncharacterized protein1.4e-2746.9Show/hide
Query:  VVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDPYSNTYNPGWKHTLTLGGEEWINKIKGDKVVKVT
        +VAL  Q+  M  LL+ M + +VN   S +  V Q+ E+GCVGC GPHNTD CP NT+TVA+V+NDPY NTYN GW++ L          +KGDK+ K  
Subjt:  VVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDPYSNTYNPGWKHTLTLGGEEWINKIKGDKVVKVT

Query:  IVVRHLAITRGTKIIDHNI-PSINNNTLPLLHLHPHKWRTSSANT
        I  +HLAI +   +I H I P   N    LLHL P+ W+  S NT
Subjt:  IVVRHLAITRGTKIIDHNI-PSINNNTLPLLHLHPHKWRTSSANT

A0A5D3CC26 Uncharacterized protein6.5e-4154.78Show/hide
Query:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGN------YRGGRGRSEEGLDKNVVVALQGQMTA
        M+K CPH+ I EC+LM+ FYFGL+K T Q+A++VF  GM++SSYNQI+  LD MASN++E  ++ FG+       +G RGR E+G+D +++VALQGQ+  
Subjt:  MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGN------YRGGRGRSEEGLDKNVVVALQGQMTA

Query:  MNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDP
        M N+L+SMA+ QVN   SS+Q V Q++EMGCVGC  PHNT+ CPLNT+ VA+++NDP
Subjt:  MNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDP

A0A5D3CSC7 Uncharacterized protein1.2e-3461.98Show/hide
Query:  SSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNT
        SSYNQI  TLD +A NNEE D+D F ++RGGRG++EEGLD+NV+V  QGQMTAMNNLL+ M   QVNA  SS Q+V Q+DE+GC+    PH  D CPLN 
Subjt:  SSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCPLNT

Query:  KTVAFVRNDPYSNTYNPGWKH
        + VA+V++DPYSNTYNP W++
Subjt:  KTVAFVRNDPYSNTYNPGWKH

A0A5D3D2S0 Uncharacterized protein3.5e-2652.89Show/hide
Query:  MMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCP
        M++SSY QI+ TLD + +N++E  +DD       RGR++ G+D+NV+VALQGQ+T M  LL+SMA+SQV+A  + +QAV Q+DEM  VGC  PH TD C 
Subjt:  MMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNATDSSIQAVNQLDEMGCVGCSGPHNTDVCP

Query:  LNTKTVAFVRNDPYSNTYNPG
        LN +  A+V++ PYSNTYN G
Subjt:  LNTKTVAFVRNDPYSNTYNPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAAGCATGCCCACACAATGGCATTTCTGAATGCATATTGATGGATGTGTTTTACTTTGGACTTAACAAGGGAACGCAACAAACTGCTGACGTTGTGTTTGTAAG
GGGTATGATGAAAAGCTCATACAACCAGATCGAGGTGACACTGGATATGATGGCCAGTAATAATGAAGAACGGGATGAAGATGATTTCGGCAATTACAGAGGAGGAAGAG
GAAGAAGTGAGGAAGGTTTGGACAAAAACGTCGTGGTGGCATTGCAAGGACAAATGACTGCAATGAATAATCTGCTGAAATCAATGGCGATTTCACAAGTTAACGCCACC
GACAGCTCTATTCAGGCGGTCAACCAACTTGATGAAATGGGATGCGTGGGATGCAGCGGTCCTCATAACACCGACGTATGCCCACTAAATACGAAGACAGTCGCATTCGT
TAGAAATGACCCCTATTCCAACACCTACAACCCTGGTTGGAAGCACACCCTAACTTTGGGTGGGGAGGAATGGATCAACAAAATCAAGGGTGACAAGGTGGTCAAGGTGA
CCATCGTGGTGAGGCATCTAGCTATTACCCGAGGCACTAAAATAATAGACCACAACATCCCCAGCATCAACAATAACACACTACCACTACTCCATCTTCATCCTCATAAA
TGGAGAACCTCCTCCGCAAATACATGCAGAAGAATGATGCCCTTTTACAAAGTCAAGCCTCATCTATTCGCAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAAGCATGCCCACACAATGGCATTTCTGAATGCATATTGATGGATGTGTTTTACTTTGGACTTAACAAGGGAACGCAACAAACTGCTGACGTTGTGTTTGTAAG
GGGTATGATGAAAAGCTCATACAACCAGATCGAGGTGACACTGGATATGATGGCCAGTAATAATGAAGAACGGGATGAAGATGATTTCGGCAATTACAGAGGAGGAAGAG
GAAGAAGTGAGGAAGGTTTGGACAAAAACGTCGTGGTGGCATTGCAAGGACAAATGACTGCAATGAATAATCTGCTGAAATCAATGGCGATTTCACAAGTTAACGCCACC
GACAGCTCTATTCAGGCGGTCAACCAACTTGATGAAATGGGATGCGTGGGATGCAGCGGTCCTCATAACACCGACGTATGCCCACTAAATACGAAGACAGTCGCATTCGT
TAGAAATGACCCCTATTCCAACACCTACAACCCTGGTTGGAAGCACACCCTAACTTTGGGTGGGGAGGAATGGATCAACAAAATCAAGGGTGACAAGGTGGTCAAGGTGA
CCATCGTGGTGAGGCATCTAGCTATTACCCGAGGCACTAAAATAATAGACCACAACATCCCCAGCATCAACAATAACACACTACCACTACTCCATCTTCATCCTCATAAA
TGGAGAACCTCCTCCGCAAATACATGCAGAAGAATGATGCCCTTTTACAAAGTCAAGCCTCATCTATTCGCAATCTAG
Protein sequenceShow/hide protein sequence
MVKACPHNGISECILMDVFYFGLNKGTQQTADVVFVRGMMKSSYNQIEVTLDMMASNNEERDEDDFGNYRGGRGRSEEGLDKNVVVALQGQMTAMNNLLKSMAISQVNAT
DSSIQAVNQLDEMGCVGCSGPHNTDVCPLNTKTVAFVRNDPYSNTYNPGWKHTLTLGGEEWINKIKGDKVVKVTIVVRHLAITRGTKIIDHNIPSINNNTLPLLHLHPHK
WRTSSANTCRRMMPFYKVKPHLFAI