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PI0023193 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023193
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr10:12049173..12049649
RNA-Seq ExpressionPI0023193
SyntenyPI0023193
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

TYK21841.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-3271.56Show/hide
Query:  FPCSKCIPYRQGCNNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETN
        FP        +   +RWTKAN+KARVYILASMSD+LSKKHE MVTA QIMDSL+EMFGQSSIQI+ +AIKYVYNA MKEGQSVR+HV+DM+V FNV E N
Subjt:  FPCSKCIPYRQGCNNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETN

Query:  VVVIDEQSQ
         VV DE+SQ
Subjt:  VVVIDEQSQ

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.7e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

A0A5A7TU93 Gag/pol protein1.7e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

A0A5A7V4M1 Gag/pol protein1.7e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

A0A5D3CPJ6 Gag/pol protein1.7e-3176.6Show/hide
Query:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ
        RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ+S QI+H+A+KY+YNARM EG SVREHVL+MMV FNV E N  VIDE SQ
Subjt:  RWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQSQ

A0A5D3DDU7 Gag/pol protein7.1e-3371.56Show/hide
Query:  FPCSKCIPYRQGCNNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETN
        FP        +   +RWTKAN+KARVYILASMSD+LSKKHE MVTA QIMDSL+EMFGQSSIQI+ +AIKYVYNA MKEGQSVR+HV+DM+V FNV E N
Subjt:  FPCSKCIPYRQGCNNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETN

Query:  VVVIDEQSQ
         VV DE+SQ
Subjt:  VVVIDEQSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTCCTTCCCCTGTTCGAAATGCATCCCATACCGTCAGGGATGCAATAACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCTAGTATGTCTGA
CGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAATCGTCCATTCAAATCCGGCACGAGGCTATTAAAT
ACGTTTATAATGCCCGTATGAAGGAAGGACAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTTAATGTGACAGAAACGAACGTGGTGGTCATTGACGAGCAA
AGTCAGTCTCTTATGAAAAATAAGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTCCTTCCCCTGTTCGAAATGCATCCCATACCGTCAGGGATGCAATAACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCTAGTATGTCTGA
CGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAATCGTCCATTCAAATCCGGCACGAGGCTATTAAAT
ACGTTTATAATGCCCGTATGAAGGAAGGACAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTTAATGTGACAGAAACGAACGTGGTGGTCATTGACGAGCAA
AGTCAGTCTCTTATGAAAAATAAGGGATAG
Protein sequenceShow/hide protein sequence
MSSFPCSKCIPYRQGCNNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVTETNVVVIDEQ
SQSLMKNKG