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PI0023218 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023218
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:10152333..10153849
RNA-Seq ExpressionPI0023218
SyntenyPI0023218
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.5e-5074.8Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLE +++ALATNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPD+ANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.5e-5074.8Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLE +++AL TNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPD+ANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.5e-5072.59Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLE +++ALATNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKE-KVNFYPYP
        AQ DHANVSAISLRSGKIL+TP++KE KV   P P
Subjt:  AQPDHANVSAISLRSGKILETPSSKE-KVNFYPYP

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-5075.59Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLE +++ALATNT+SFQ +MKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPDHANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-4974.02Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLRWGND Q   QA S+S+NQGTNLE +++AL TNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPDHANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein4.6e-5074.8Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLE +++AL TNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPD+ANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

A0A5A7VQ60 Retrotransposon gag protein4.6e-5072.59Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLE +++ALATNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKE-KVNFYPYP
        AQ DHANVSAISLRSGKIL+TP++KE KV   P P
Subjt:  AQPDHANVSAISLRSGKILETPSSKE-KVNFYPYP

A0A5D3CB46 Retrotransposon gag protein1.2e-5075.59Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLE +++ALATNT+SFQ +MKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPDHANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

A0A5D3CFE7 Retrotransposon gag protein7.9e-5074.02Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLRWGND Q   QA S+S+NQGTNLE +++AL TNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPDHANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

E5GBZ4 Retrotransposon gag protein1.2e-5074.8Show/hide
Query:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP
        VGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLE +++ALATNT+SFQ EMKQQM+ LT AISK++GKGKLP
Subjt:  VGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLP

Query:  AQPDHANVSAISLRSGKILETPSSKEK
        AQPD+ANVSAISLRSGKIL+TP++KEK
Subjt:  AQPDHANVSAISLRSGKILETPSSKEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGTTGGACATCCTAATGACAAGTGTCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAA
CGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCGCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAACATTTAGTTA
GAGCTCTTGCTACTAATACTATCTCTTTTCAAAATGAAATGAAACAGCAGATGTCTCATCTAACAAATGCCATAAGCAAATTAGAAGGAAAAGGCAAACTTCCAGCTCAG
CCAGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCAAAGAAAAGGTTAACTTCTACCCCTATCCTTCTAGAAAACAAAG
ATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGTTGGACATCCTAATGACAAGTGTCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAA
CGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCGCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAACATTTAGTTA
GAGCTCTTGCTACTAATACTATCTCTTTTCAAAATGAAATGAAACAGCAGATGTCTCATCTAACAAATGCCATAAGCAAATTAGAAGGAAAAGGCAAACTTCCAGCTCAG
CCAGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCAAAGAAAAGGTTAACTTCTACCCCTATCCTTCTAGAAAACAAAG
ATGA
Protein sequenceShow/hide protein sequence
MAPLPGSDVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEHLVRALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQ
PDHANVSAISLRSGKILETPSSKEKVNFYPYPSRKQR