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PI0023245 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023245
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr09:17406631..17407008
RNA-Seq ExpressionPI0023245
SyntenyPI0023245
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO73521.1 gag-pol polyprotein [Glycine max]7.1e-3860.63Show/hide
Query:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVS--LKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIK
        MN+ ++G    RP +LDGSNY YWKA+MVAFLKS+DSRTWKAV+ GW+HP + D++GK +  LKPE  WT  EDE +LGN +ALNA+FN VD+N+F+LI 
Subjt:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVS--LKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIK

Query:  TCFSAKEAWKILDVAFEGTSKVKMLHL
        TC  AK+AW+IL +  EGTSKVK+  L
Subjt:  TCFSAKEAWKILDVAFEGTSKVKMLHL

AAO73527.1 gag-pol polyprotein [Glycine max]2.4e-3861.42Show/hide
Query:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVS--LKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIK
        MN+ ++G    RP +LDGSNY YWKA+MVAFLKS+DSRTWKAV+ GW+HP + D++GK +  LKPE  WT  EDE +LGN +ALNA+FN VD+N+F+LI 
Subjt:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVS--LKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIK

Query:  TCFSAKEAWKILDVAFEGTSKVKMLHL
        TC  AK+AW+IL +  EGTSKVKM  L
Subjt:  TCFSAKEAWKILDVAFEGTSKVKMLHL

KAA0032368.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.2e-3971.07Show/hide
Query:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTC
        MN+I++G STTRP VLDG NYAYWKA+M AFLKSID++TWKAV++ W+ PTIT  D K + K E  WT  ED+ASLGN RALNAI+N  DQNVFKLI TC
Subjt:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTC

Query:  FSAKEAWKILDVAFEGTSKVK
         SAKEAWKIL+VA+EGTSKVK
Subjt:  FSAKEAWKILDVAFEGTSKVK

KAA0035422.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]4.2e-3863.11Show/hide
Query:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA
        +R+GSSTTRP VLDG+NYAYWKA+++AF+KSIDS+ WKA++ G +HP+  D  GK +LK E+ W+  +DEA+ GN RALNAIFN VDQN+FK I TC  A
Subjt:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA

Query:  KEAWKILDVAFEGTSKVKMLHL
        KEAW IL+ A+EGTSKVK+  L
Subjt:  KEAWKILDVAFEGTSKVKMLHL

XP_008464095.1 PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo]4.2e-3863.11Show/hide
Query:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA
        +R+GSSTTRP VLDG+NYAYWKA+++AF+KSIDS+ WKA++ G +HP+  D  GK +LK E+ W+  +DEA+ GN RALNAIFN VDQN+FK I TC  A
Subjt:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA

Query:  KEAWKILDVAFEGTSKVKMLHL
        KEAW IL+ A+EGTSKVK+  L
Subjt:  KEAWKILDVAFEGTSKVKMLHL

TrEMBL top hitse value%identityAlignment
A0A1S3CKP5 uncharacterized protein LOC1035020612.0e-3863.11Show/hide
Query:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA
        +R+GSSTTRP VLDG+NYAYWKA+++AF+KSIDS+ WKA++ G +HP+  D  GK +LK E+ W+  +DEA+ GN RALNAIFN VDQN+FK I TC  A
Subjt:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA

Query:  KEAWKILDVAFEGTSKVKMLHL
        KEAW IL+ A+EGTSKVK+  L
Subjt:  KEAWKILDVAFEGTSKVKMLHL

A0A5A7SP99 Gag-pol polyprotein1.1e-3971.07Show/hide
Query:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTC
        MN+I++G STTRP VLDG NYAYWKA+M AFLKSID++TWKAV++ W+ PTIT  D K + K E  WT  ED+ASLGN RALNAI+N  DQNVFKLI TC
Subjt:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTC

Query:  FSAKEAWKILDVAFEGTSKVK
         SAKEAWKIL+VA+EGTSKVK
Subjt:  FSAKEAWKILDVAFEGTSKVK

A0A5A7SVY3 Gag-proteinase polyprotein2.0e-3863.11Show/hide
Query:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA
        +R+GSSTTRP VLDG+NYAYWKA+++AF+KSIDS+ WKA++ G +HP+  D  GK +LK E+ W+  +DEA+ GN RALNAIFN VDQN+FK I TC  A
Subjt:  IRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSA

Query:  KEAWKILDVAFEGTSKVKMLHL
        KEAW IL+ A+EGTSKVK+  L
Subjt:  KEAWKILDVAFEGTSKVKMLHL

A0A5A7VGN0 Gag-proteinase polyprotein3.4e-3861.48Show/hide
Query:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTC
        M+ IR+G+STTRP +LDG NY YWK++M+AFL S+D R+WKA+++GW+HPT  D  GKV+ K EL W S ED+A++GN RALN +FN VDQN+FKLI T 
Subjt:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTC

Query:  FSAKEAWKILDVAFEGTSKVKM
          AK AW+IL+VA+EGTS +KM
Subjt:  FSAKEAWKILDVAFEGTSKVKM

Q84VH8 Gag-pol polyprotein1.2e-3861.42Show/hide
Query:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVS--LKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIK
        MN+ ++G    RP +LDGSNY YWKA+MVAFLKS+DSRTWKAV+ GW+HP + D++GK +  LKPE  WT  EDE +LGN +ALNA+FN VD+N+F+LI 
Subjt:  MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVS--LKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIK

Query:  TCFSAKEAWKILDVAFEGTSKVKMLHL
        TC  AK+AW+IL +  EGTSKVKM  L
Subjt:  TCFSAKEAWKILDVAFEGTSKVKMLHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTCATCAGAAAAGGTAGCTCTACTACTAGACCTCTAGTGCTCGATGGATCAAATTATGCCTACTGGAAGGCAAAAATGGTTGCGTTTCTTAAGTCTATTGACAG
TAGAACTTGGAAGGCAGTGGTGACAGGTTGGGATCACCCTACAATCACGGATAGTGATGGTAAAGTTTCTCTTAAACCAGAGTTGTTGTGGACTAGTGTAGAGGATGAAG
CTTCCCTGGGAAACTTTCGTGCACTCAATGCAATTTTCAATAAGGTTGATCAGAATGTTTTCAAACTGATTAAGACCTGCTTTTCGGCCAAAGAAGCTTGGAAAATTTTG
GATGTTGCTTTTGAAGGCACGTCCAAGGTAAAGATGTTGCATCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTCATCAGAAAAGGTAGCTCTACTACTAGACCTCTAGTGCTCGATGGATCAAATTATGCCTACTGGAAGGCAAAAATGGTTGCGTTTCTTAAGTCTATTGACAG
TAGAACTTGGAAGGCAGTGGTGACAGGTTGGGATCACCCTACAATCACGGATAGTGATGGTAAAGTTTCTCTTAAACCAGAGTTGTTGTGGACTAGTGTAGAGGATGAAG
CTTCCCTGGGAAACTTTCGTGCACTCAATGCAATTTTCAATAAGGTTGATCAGAATGTTTTCAAACTGATTAAGACCTGCTTTTCGGCCAAAGAAGCTTGGAAAATTTTG
GATGTTGCTTTTGAAGGCACGTCCAAGGTAAAGATGTTGCATCTGTAA
Protein sequenceShow/hide protein sequence
MNVIRKGSSTTRPLVLDGSNYAYWKAKMVAFLKSIDSRTWKAVVTGWDHPTITDSDGKVSLKPELLWTSVEDEASLGNFRALNAIFNKVDQNVFKLIKTCFSAKEAWKIL
DVAFEGTSKVKMLHL