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PI0023298 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023298
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:7471274..7471702
RNA-Seq ExpressionPI0023298
SyntenyPI0023298
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-4166.9Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        MT  KA SK++  +D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG IVIR+NPLF+N  P  ++S+++SHLEVVSVMMVD+  EATMAEMER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+T+ESSQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

KAA0032461.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-4166.9Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        MT  KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+NPLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+TAESSQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

KAA0033526.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-4266.9Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        M  K A SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKGEI+IR+NPLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+TAESSQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

KAA0044976.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-4065.49Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+NPLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+T E SQ   VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

TYK16493.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-4166.2Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+NPLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+T E SQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

TrEMBL top hitse value%identityAlignment
A0A5A7SRE2 Ty3-gypsy retrotransposon protein9.9e-4266.9Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        MT  KA SK++  +D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG IVIR+NPLF+N  P  ++S+++SHLEVVSVMMVD+  EATMAEMER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+T+ESSQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

A0A5A7SSD3 Retrotransposon gag protein5.8e-4266.9Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        MT  KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+NPLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+TAESSQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

A0A5A7SU65 Ty3-gypsy retrotransposon protein3.4e-4266.9Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        M  K A SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKGEI+IR+NPLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+TAESSQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

A0A5A7TS57 Ty3-gypsy retrotransposon protein1.1e-4065.49Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+NPLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+T E SQ   VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

A0A5D3CX82 Ty3-gypsy retrotransposon protein2.9e-4166.2Show/hide
Query:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER
        M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+NPLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMER
Subjt:  MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMER

Query:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK
        K+N LMK VEERDHEI+AL+DQMKAC+T E SQT  VKA DK
Subjt:  KLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCAAAGAAAGCCACATCTAAAGCTACCATCGCAAACGACGCTTACACTAGACCTGTAACCCAGGGTAACTCAAAGAGAATCATGCATGAACAAGAATATGGTTT
TGTCCTTACAAAGAAAAGCTATAAACAATTGATGGAATCTCCTAAAGGCGAGATCGTCATCAGAGAGAATCCTTTGTTTGACAACTTTGCTCCTACTTTTGATATATCAG
AGAGAAAATCACACCTTGAAGTAGTGTCTGTCATGATGGTAGATATAAAAACTGAGGCAACCATGGCAGAGATGGAGAGGAAATTAAATCTCCTAATGAAAGCGGTTGAG
GAGCGAGATCATGAAATCAGTGCCTTGAGAGATCAAATGAAGGCTTGTAAAACTGCTGAGTCGAGTCAAACTTTTGCTGTCAAAGCTAACGATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACACCAAAGAAAGCCACATCTAAAGCTACCATCGCAAACGACGCTTACACTAGACCTGTAACCCAGGGTAACTCAAAGAGAATCATGCATGAACAAGAATATGGTTT
TGTCCTTACAAAGAAAAGCTATAAACAATTGATGGAATCTCCTAAAGGCGAGATCGTCATCAGAGAGAATCCTTTGTTTGACAACTTTGCTCCTACTTTTGATATATCAG
AGAGAAAATCACACCTTGAAGTAGTGTCTGTCATGATGGTAGATATAAAAACTGAGGCAACCATGGCAGAGATGGAGAGGAAATTAAATCTCCTAATGAAAGCGGTTGAG
GAGCGAGATCATGAAATCAGTGCCTTGAGAGATCAAATGAAGGCTTGTAAAACTGCTGAGTCGAGTCAAACTTTTGCTGTCAAAGCTAACGATAAATGA
Protein sequenceShow/hide protein sequence
MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVE
ERDHEISALRDQMKACKTAESSQTFAVKANDK