CuGenDBv2

Gene ID	PI0023323
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr07:12806155..12806481
RNA-Seq Expression	PI0023323
Synteny	PI0023323
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043429.1 uncharacterized protein E6C27_scaffold1639G00390 [Cucumis melo var. makuwa]

1.5e-39

77.78

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR RQNQDGMQ PT+GQ  G S+TPRVQ G GNE+FAR  QEIGRPER EPSDP+K Y IE+LKKLGA VFEG T+P DAE WLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CPE+RKV
Subjt:  SCPEERKV

KAA0067812.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-39

77.78

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRT RR +QNQDGMQ PT+G   G S T RVQ G GNEQFAR  QEIGRP+R EPSDPKK YGIERLKKLGA V+EGST+P DAE WLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CPEERKV
Subjt:  SCPEERKV

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]

1.9e-39

76.85

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP+KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CP++RKV
Subjt:  SCPEERKV

XP_008448403.1 PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo]

1.9e-39

76.85

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP+KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CP++RKV
Subjt:  SCPEERKV

XP_016899851.1 PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo]

3.3e-39

77.78

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR RQNQDGMQ PT+GQ E GS+TPR Q  VG+E+FAR+AQEI RPER  PSD  KMYGIE+LKKLGA VF+GST+P DAEVWLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        SCP+E+KV
Subjt:  SCPEERKV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BJ07 uncharacterized protein LOC103490604

9.2e-40

76.85

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP+KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CP++RKV
Subjt:  SCPEERKV

A0A5A7TQE9 Uncharacterized protein

7.1e-40

77.78

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR RQNQDGMQ PT+GQ  G S+TPRVQ G GNE+FAR  QEIGRPER EPSDP+K Y IE+LKKLGA VFEG T+P DAE WLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CPE+RKV
Subjt:  SCPEERKV

A0A5A7UAH6 CCHC-type domain-containing protein

1.6e-39

77.78

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR RQNQDGMQ PT+GQ E GS+TPR Q  VG+E+FAR+AQEI RPER  PSD  KMYGIE+LKKLGA VF+GST+P DAEVWLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        SCP+E+KV
Subjt:  SCPEERKV

A0A5A7VHG2 Reverse transcriptase

9.2e-40

77.78

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRT RR +QNQDGMQ PT+G   G S T RVQ G GNEQFAR  QEIGRP+R EPSDPKK YGIERLKKLGA V+EGST+P DAE WLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CPEERKV
Subjt:  SCPEERKV

A0A5D3BMJ4 Retrotrans_gag domain-containing protein

9.2e-40

76.85

Show/hide

Query:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM
        MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP+KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM
Subjt:  MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVM

Query:  SCPEERKV
        +CP++RKV
Subjt:  SCPEERKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCACCACGTACTAGCAGACGATGTAGGCAAAATCAGGACGGGATGCAAGATCCTACCGAGGGTCAGTTTGAAGGGGGTTCTAATACCCCAAGAGTTCAGACTGGGGT
AGGAAATGAGCAGTTTGCTAGAGCTGCACAAGAGATAGGTAGGCCAGAGAGACCAGAGCCTAGTGACCCGAAAAAGATGTATGGAATAGAACGACTGAAGAAGTTGGGAG
CCATAGTGTTTGAGGGTTCCACAAATCCAGTTGACGCTGAAGTTTGGTTGAATATGCTTGAGAAATGTTTTGATGTGATGAGTTGTCCCGAGGAACGGAAAGTCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV

PI0023323 (gene) of Melon (PI 482460) v1 genome