CuGenDBv2

Gene ID	PI0023360
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr08:8878315..8878578
RNA-Seq Expression	PI0023360
Synteny	PI0023360
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.0e-28

78.16

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTTTFLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.8e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTT FLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

5.0e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTTTFLHGELEEVIYMAQPKGYEVK KEDMV RLHK               FDTFILKQGFHRNSYDACVYWK+S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

3.8e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTT FLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.8e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTT FLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

4.9e-29

78.16

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTTTFLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

A0A5A7UB25 Putative gag-pol polyprotein

1.9e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTT FLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class

2.4e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTTTFLHGELEEVIYMAQPKGYEVK KEDMV RLHK               FDTFILKQGFHRNSYDACVYWK+S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

A0A5D3CTV2 Putative polyprotein

1.9e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTT FLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

A0A5D3DNU1 Putative gag-pol polyprotein

1.9e-28

77.01

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        MDVTT FLHGELEEVIYMAQPKGYEVK KEDMVCRLHK               FDTFILKQGFHRNSYDACVYWK S+KGTYIY LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHK---------------FDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.4e-11

41.38

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Query:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLH---------------KFDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL
        +DV T FLHG+LEE IYM QP+G+EV  K+ MVC+L+               KFD+F+  Q + +   D CVY+K   +  +I  LL
Subjt:  MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLH---------------KFDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATGTCACCACAACATTCCTTCATGGAGAATTGGAGGAGGTGATTTACATGGCTCAACCGAAGGGATATGAGGTGAAGCGTAAGGAAGACATGGTTTGTCGCCTTCA
CAAATTTGATACTTTTATTCTAAAGCAAGGGTTTCATAGGAACTCATATGATGCTTGTGTTTACTGGAAAATATCTAAAAAAGGTACATATATTTATCAACTACTGTAG

mRNA sequence

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Protein sequence

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MDVTTTFLHGELEEVIYMAQPKGYEVKRKEDMVCRLHKFDTFILKQGFHRNSYDACVYWKISKKGTYIYQLL

PI0023360 (gene) of Melon (PI 482460) v1 genome