; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023380 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023380
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:12247504..12249063
RNA-Seq ExpressionPI0023380
SyntenyPI0023380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-5165.48Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG  LKVT+C VCGLVGHPNDKC ++I+DVN +R YDPH NTYNSGW+DNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ
        QEMKQQMTQLTTAISK++GKGKL AQ ++ANVSA+SLRSGKI++TP+++EKK TS P+ L  ++E K+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ

KAA0051064.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-5263.69Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MT+LLTSFVQG  LKVT+C VCGLVGHPNDKC K+I+DVN  R YDPH NTYNSGW+DNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGEKSQRQGHDK
        QEMKQQMTQLTTAISK++GKGKL AQPDHANVSAISLRSGKI++T +++EKK+TS P+ L +E++ ++ EK+    + K
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGEKSQRQGHDK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-5172.37Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG   KVT+C VCGLVGHPNDKCLK+I+DVN +R YDPHSNTYNSGW+DNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKK
        QEMKQQMTQLTTAISK++GKGKLPAQPD+ANVSAISLRSGKI++TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-5267.66Show/hide
Query:  TTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------Q
        TTLLTSFVQG  LKVT+C VCGLVGH N+KC ++I+DVN +R YDPHSNTYNSGW+DNPNLRWGNDNQK TQA S+SSN                    Q
Subjt:  TTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------Q

Query:  EMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ
        EMKQQMTQLTTAISK++GKGKLPAQ DHANVSAISLRSGKI++TP+++EKKVTS P+ L +++E K+
Subjt:  EMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-5365.17Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG   KVT+C VCGLVGHPNDKC K+I+DVN +R YDPHSNTYNSGW+DN NLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGE-KSQRQGH
        Q+MKQQMTQLTTAISK++GKGKLPAQPDHANVSAISLRSGKI++TP+++EKK+TS P+ L +++E K+ +  S+++G+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGE-KSQRQGH

TrEMBL top hitse value%identityAlignment
A0A5A7U6X0 Retrotransposon gag protein8.6e-5363.69Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MT+LLTSFVQG  LKVT+C VCGLVGHPNDKC K+I+DVN  R YDPH NTYNSGW+DNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGEKSQRQGHDK
        QEMKQQMTQLTTAISK++GKGKL AQPDHANVSAISLRSGKI++T +++EKK+TS P+ L +E++ ++ EK+    + K
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGEKSQRQGHDK

A0A5A7V0Q7 Retrotransposon gag protein5.6e-5272.37Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG   KVT+C VCGLVGHPNDKCLK+I+DVN +R YDPHSNTYNSGW+DNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKK
        QEMKQQMTQLTTAISK++GKGKLPAQPD+ANVSAISLRSGKI++TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKK

A0A5A7VQ60 Retrotransposon gag protein1.5e-5267.66Show/hide
Query:  TTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------Q
        TTLLTSFVQG  LKVT+C VCGLVGH N+KC ++I+DVN +R YDPHSNTYNSGW+DNPNLRWGNDNQK TQA S+SSN                    Q
Subjt:  TTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------Q

Query:  EMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ
        EMKQQMTQLTTAISK++GKGKLPAQ DHANVSAISLRSGKI++TP+++EKKVTS P+ L +++E K+
Subjt:  EMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ

A0A5D3CB46 Retrotransposon gag protein2.3e-5365.17Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG   KVT+C VCGLVGHPNDKC K+I+DVN +R YDPHSNTYNSGW+DN NLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGE-KSQRQGH
        Q+MKQQMTQLTTAISK++GKGKLPAQPDHANVSAISLRSGKI++TP+++EKK+TS P+ L +++E K+ +  S+++G+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGE-KSQRQGH

A0A5D3CRR8 Retrotransposon gag protein1.2e-5165.48Show/hide
Query:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQG  LKVT+C VCGLVGHPNDKC ++I+DVN +R YDPH NTYNSGW+DNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ
        QEMKQQMTQLTTAISK++GKGKL AQ ++ANVSA+SLRSGKI++TP+++EKK TS P+ L  ++E K+
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDHANVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGTGGTGCTCTCAAAGTAACCCAATGTGAAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCTCAAGTTGATCAA
AGATGTGAATACTATTAGGATGTATGACCCCCATAGTAATACATACAATTCGGGATGGAAAGACAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACCAAGAGATGAAACAACAAATGACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGTAAGCTTCCGGCCCAACCGGACCATGCA
AATGTAAGTGCCATCTCACTTAGAAGTGGTAAGATTATTGAAACCCCTTCTAGTGAAGAAAAAAAGGTAACTTCCAATCCTGTCCTTCTTGAAAATGAAAGTGAATTTAA
GCAAGGCGAGAAGAGTCAGCGCCAAGGGCATGACAAGGTCTGGACAAGGCGAGCAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGTGGTGCTCTCAAAGTAACCCAATGTGAAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCTCAAGTTGATCAA
AGATGTGAATACTATTAGGATGTATGACCCCCATAGTAATACATACAATTCGGGATGGAAAGACAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACCAAGAGATGAAACAACAAATGACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGTAAGCTTCCGGCCCAACCGGACCATGCA
AATGTAAGTGCCATCTCACTTAGAAGTGGTAAGATTATTGAAACCCCTTCTAGTGAAGAAAAAAAGGTAACTTCCAATCCTGTCCTTCTTGAAAATGAAAGTGAATTTAA
GCAAGGCGAGAAGAGTCAGCGCCAAGGGCATGACAAGGTCTGGACAAGGCGAGCAACTTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGALKVTQCEVCGLVGHPNDKCLKLIKDVNTIRMYDPHSNTYNSGWKDNPNLRWGNDNQKPTQATSSSSNQEMKQQMTQLTTAISKLEGKGKLPAQPDHA
NVSAISLRSGKIIETPSSEEKKVTSNPVLLENESEFKQGEKSQRQGHDKVWTRRAT