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PI0023402 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023402
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:19434086..19434690
RNA-Seq ExpressionPI0023402
SyntenyPI0023402
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-3145.09Show/hide
Query:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQGLDIAPDDI
        CSGFGWNDE KCI+AEKE++D+WV+SH AAKGLLNK FP     +    +        +    +      G   F     +D +F  MY +GL+++PD++
Subjt:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQGLDIAPDDI

Query:  MGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        MGTR +  SE R  SS SK+K+GG   ++ +I+R+A+EY N+QL  IAEW   Q QDA+ TR +VV++L+ IP
Subjt:  MGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-3446.81Show/hide
Query:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF
        MCSGFGWNDE KCI+AEKE++D+WVKSH AAKGLLNK F          +E       L  +   DR        F  ++ N              D +F
Subjt:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF

Query:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        P MY QGL+++PDD+MGTR +  SE R  SS SKRK+ G A+++ +I+R+A+EY N+QL  IAEWP  Q Q+AS TR +VV++L+ IP
Subjt:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]6.2e-3246.93Show/hide
Query:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN------DVEFPMMYCQGLD
        CSGFGWNDE KCI+ EKEL+D+WVKSH AAKGLLNK F         L  +  ++ A       +     G+ D P           D +FP MY  GL+
Subjt:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN------DVEFPMMYCQGLD

Query:  IAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        ++PDD+M TR +  SE R  SS SKRK+ G A+++ +I+R+A+EY N+QL  IAEWP  Q QDAS TR ++V++L+ IP
Subjt:  IAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

TYK10954.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-3447.87Show/hide
Query:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF
        MCSGFGWNDE KCI+AEKE++D+WVKSH AAKGLLNK F         L       V  K     DR        F  ++ N              D +F
Subjt:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF

Query:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        P MY QGL+++PDD+MGTR +  SE R  SS SKRK+ G A+++ +I+R+A+EY N+QL  IAEWP  Q Q+AS TR +VV+KL+ IP
Subjt:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]6.2e-3245.86Show/hide
Query:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPII--------TTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQG
        CSGFGWN+E +CIIAE++L+D+W+KSH AAKGLL+K FP             AT         V   +  M + T        PL   +D + P MY QG
Subjt:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPII--------TTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQG

Query:  LDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        + ++PD++ G R   ASE R  SS SKRK+G +  E  E+IRS ME+ N+QLKAIA+WPKE+       RA+VVK+LQ IP
Subjt:  LDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.0e-3245.86Show/hide
Query:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPII--------TTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQG
        CSGFGWN+E +CIIAE++L+D+W+KSH AAKGLL+K FP             AT         V   +  M + T        PL   +D + P MY QG
Subjt:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPII--------TTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQG

Query:  LDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        + ++PD++ G R   ASE R  SS SKRK+G +  E  E+IRS ME+ N+QLKAIA+WPKE+       RA+VVK+LQ IP
Subjt:  LDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

A0A5A7U0H7 Retrotransposon protein3.0e-3245.86Show/hide
Query:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPII--------TTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQG
        CSGFGWN+E +CIIAE++L+D+W+KSH AAKGLL+K FP             AT         V   +  M + T        PL   +D + P MY QG
Subjt:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPII--------TTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQG

Query:  LDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        + ++PD++ G R   ASE R  SS SKRK+G +  E  E+IRS ME+ N+QLKAIA+WPKE+       RA+VVK+LQ IP
Subjt:  LDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

A0A5A7VBC5 Retrotransposon protein1.9e-3446.81Show/hide
Query:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF
        MCSGFGWNDE KCI+AEKE++D+WVKSH AAKGLLNK F          +E       L  +   DR        F  ++ N              D +F
Subjt:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF

Query:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        P MY QGL+++PDD+MGTR +  SE R  SS SKRK+ G A+++ +I+R+A+EY N+QL  IAEWP  Q Q+AS TR +VV++L+ IP
Subjt:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

A0A5D3C1M0 Retrotransposon protein3.0e-3246.93Show/hide
Query:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN------DVEFPMMYCQGLD
        CSGFGWNDE KCI+ EKEL+D+WVKSH AAKGLLNK F         L  +  ++ A       +     G+ D P           D +FP MY  GL+
Subjt:  CSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN------DVEFPMMYCQGLD

Query:  IAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        ++PDD+M TR +  SE R  SS SKRK+ G A+++ +I+R+A+EY N+QL  IAEWP  Q QDAS TR ++V++L+ IP
Subjt:  IAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

A0A5D3CIF5 Retrotransposon protein2.5e-3447.87Show/hide
Query:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF
        MCSGFGWNDE KCI+AEKE++D+WVKSH AAKGLLNK F         L       V  K     DR        F  ++ N              D +F
Subjt:  MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGN--------------DVEF

Query:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP
        P MY QGL+++PDD+MGTR +  SE R  SS SKRK+ G A+++ +I+R+A+EY N+QL  IAEWP  Q Q+AS TR +VV+KL+ IP
Subjt:  PMMYCQGLDIAPDDIMGTRPSGASESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGTGGGTTTGGTTGGAATGATGAGCTGAAATGCATTATTGCCGAGAAAGAGTTGTACGACAATTGGGTGAAGAGTCATCTAGCCGCAAAAGGCCTCCTAAACAA
ACATTTCCCTATTATAACAACCTCTGCTACGTCTTTGGAAGAGATCGTGCAACAAGAGGTCGCTCTGAAACTTTTGCCCATGTTGGACCGAACATGCCTGCATGGTACGA
TGGATTTTCCGCTTATAAAGGGGAACGATGTGGAGTTCCCCATGATGTACTGTCAGGGACTGGACATAGCACCTGACGACATAATGGGCACACGACCAAGTGGGGCGTCT
GAGAGTAGGACGGGTTCGAGCAATTCAAAGAGGAAACAGGGAGGACAGGCGTCCGAGGCGGCAGAAATTATTCGCAGTGCCATGGAATATGTGAACGACCAGCTGAAGGC
CATAGCAGAATGGCCCAAAGAACAATGCCAAGATGCAAGCGTGACACGTGCGAAAGTCGTTAAAAAACTGCAGGGAATCCCGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGTGGGTTTGGTTGGAATGATGAGCTGAAATGCATTATTGCCGAGAAAGAGTTGTACGACAATTGGGTGAAGAGTCATCTAGCCGCAAAAGGCCTCCTAAACAA
ACATTTCCCTATTATAACAACCTCTGCTACGTCTTTGGAAGAGATCGTGCAACAAGAGGTCGCTCTGAAACTTTTGCCCATGTTGGACCGAACATGCCTGCATGGTACGA
TGGATTTTCCGCTTATAAAGGGGAACGATGTGGAGTTCCCCATGATGTACTGTCAGGGACTGGACATAGCACCTGACGACATAATGGGCACACGACCAAGTGGGGCGTCT
GAGAGTAGGACGGGTTCGAGCAATTCAAAGAGGAAACAGGGAGGACAGGCGTCCGAGGCGGCAGAAATTATTCGCAGTGCCATGGAATATGTGAACGACCAGCTGAAGGC
CATAGCAGAATGGCCCAAAGAACAATGCCAAGATGCAAGCGTGACACGTGCGAAAGTCGTTAAAAAACTGCAGGGAATCCCGAGCTGA
Protein sequenceShow/hide protein sequence
MCSGFGWNDELKCIIAEKELYDNWVKSHLAAKGLLNKHFPIITTSATSLEEIVQQEVALKLLPMLDRTCLHGTMDFPLIKGNDVEFPMMYCQGLDIAPDDIMGTRPSGAS
ESRTGSSNSKRKQGGQASEAAEIIRSAMEYVNDQLKAIAEWPKEQCQDASVTRAKVVKKLQGIPS