; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023424 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023424
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPMD domain-containing protein
Genome locationchr02:8819948..8820981
RNA-Seq ExpressionPI0023424
SyntenyPI0023424
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34118.1 hypothetical protein [Cucumis melo subsp. melo]8.4e-6859.23Show/hide
Query:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKD--
        LE +VKEH++ESD S+SDR  +   +K +      D+  RL+E  +D+SLT PHVVDSA EEVGT KT V KPAEQSL PSAL ++IRR KM V  KD  
Subjt:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKD--

Query:  -----------------------IKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE
                               +K S  P  A  +    +PEPS+W+GEKVVSNFFQKTALCMWEDIQDK M+TP+E IPR RPEIATVL  I KIHA+
Subjt:  -----------------------IKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE

Query:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL
         +TSLEEYLNSYL RVDNFNDVQSSY  QLLST+K RQL+EKTSAIKE LTL+ QLR ++
Subjt:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]5.8e-6960.39Show/hide
Query:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQ--------------------SPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRP
        LE +VKEH++ES+ S+SDR  +   +K +                      SPL+D+L+ L+E  +D SLT PH VDSA EEVGT KTLV KPAEQSL P
Subjt:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQ--------------------SPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRP

Query:  SALLKKIRRDKMKVNEKDIKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAENMTSL
        SALL++IRR KM V EK ++  +P   A        PEPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATV   I KIHA+ +TSL
Subjt:  SALLKKIRRDKMKVNEKDIKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAENMTSL

Query:  EEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL
        EEYLNSYL RVDNFNDVQSSY  QLLST+K  QL+EKTSAI E LTL+ QLR ++
Subjt:  EEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL

KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]9.0e-7060.54Show/hide
Query:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV
        LE +VKEH++ESD S+SD    R L+R+ +      +SPL+D+L+ L+E  +D+SLT PH VDS  EEVGT KT V KPAEQSLRPSALL++IRR KM V
Subjt:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV

Query:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK
          KD+++                       S  P  A       +PEPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATVL  I K
Subjt:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK

Query:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR
        IHA+ +TSLEEYLNSYL RVDNFNDVQSS+ TQLLS +K RQL+EKTSAIKE LTL+ QLR
Subjt:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR

TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]9.0e-7060.54Show/hide
Query:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV
        LE +VKEH++ESD S+SD    R L+R+ +      +SPL+D+L+ L+E  +D+SLT PH VDS  EEVGT KT V KPAEQSLRPSALL++IRR KM V
Subjt:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV

Query:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK
          KD+++                       S  P  A       +PEPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATVL  I K
Subjt:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK

Query:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR
        IHA+ +TSLEEYLNSYL RVDNFNDVQSS+ TQLLS +K RQL+EKTSAIKE LTL+ QLR
Subjt:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR

TYK06433.1 hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa]3.4e-6960Show/hide
Query:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKDIK
        LE +VKEH++ESD S+SDR  +   +K +      D+  RL+E  +D+SLT PHVVDSA EEVGT KT V KPAEQSLRPSAL ++IRR KM V  KD++
Subjt:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKDIK

Query:  NSN------PPAKAPKRLREGHP-------------------EPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE
        + +      P A  PK      P                   EPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATVL  I KIHA+
Subjt:  NSN------PPAKAPKRLREGHP-------------------EPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE

Query:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL
         +TSLEEYLNSYL RVDNFNDVQSSY  QLLST+K RQL+EKTS IKE LTL+ QLR ++
Subjt:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL

TrEMBL top hitse value%identityAlignment
A0A5A7U8L3 PMD domain-containing protein2.8e-6960.39Show/hide
Query:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQ--------------------SPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRP
        LE +VKEH++ES+ S+SDR  +   +K +                      SPL+D+L+ L+E  +D SLT PH VDSA EEVGT KTLV KPAEQSL P
Subjt:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQ--------------------SPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRP

Query:  SALLKKIRRDKMKVNEKDIKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAENMTSL
        SALL++IRR KM V EK ++  +P   A        PEPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATV   I KIHA+ +TSL
Subjt:  SALLKKIRRDKMKVNEKDIKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAENMTSL

Query:  EEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL
        EEYLNSYL RVDNFNDVQSSY  QLLST+K  QL+EKTSAI E LTL+ QLR ++
Subjt:  EEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL

A0A5A7V4F4 PMD domain-containing protein4.4e-7060.54Show/hide
Query:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV
        LE +VKEH++ESD S+SD    R L+R+ +      +SPL+D+L+ L+E  +D+SLT PH VDS  EEVGT KT V KPAEQSLRPSALL++IRR KM V
Subjt:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV

Query:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK
          KD+++                       S  P  A       +PEPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATVL  I K
Subjt:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK

Query:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR
        IHA+ +TSLEEYLNSYL RVDNFNDVQSS+ TQLLS +K RQL+EKTSAIKE LTL+ QLR
Subjt:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR

A0A5D3BRA8 PMD domain-containing protein4.4e-7060.54Show/hide
Query:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV
        LE +VKEH++ESD S+SD    R L+R+ +      +SPL+D+L+ L+E  +D+SLT PH VDS  EEVGT KT V KPAEQSLRPSALL++IRR KM V
Subjt:  LERKVKEHREESDRSRSD-RIGRDLRRKQR-----HQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKV

Query:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK
          KD+++                       S  P  A       +PEPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATVL  I K
Subjt:  NEKDIKN-----------------------SNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAK

Query:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR
        IHA+ +TSLEEYLNSYL RVDNFNDVQSS+ TQLLS +K RQL+EKTSAIKE LTL+ QLR
Subjt:  IHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLR

A0A5D3C3D7 PMD domain-containing protein1.7e-6960Show/hide
Query:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKDIK
        LE +VKEH++ESD S+SDR  +   +K +      D+  RL+E  +D+SLT PHVVDSA EEVGT KT V KPAEQSLRPSAL ++IRR KM V  KD++
Subjt:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKDIK

Query:  NSN------PPAKAPKRLREGHP-------------------EPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE
        + +      P A  PK      P                   EPS+W+GEKVVSNFFQKTALCMWEDIQDK MRTP+EYIPR RPEIATVL  I KIHA+
Subjt:  NSN------PPAKAPKRLREGHP-------------------EPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE

Query:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL
         +TSLEEYLNSYL RVDNFNDVQSSY  QLLST+K RQL+EKTS IKE LTL+ QLR ++
Subjt:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL

E5GCB9 PMD domain-containing protein4.1e-6859.23Show/hide
Query:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKD--
        LE +VKEH++ESD S+SDR  +   +K +      D+  RL+E  +D+SLT PHVVDSA EEVGT KT V KPAEQSL PSAL ++IRR KM V  KD  
Subjt:  LERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKD--

Query:  -----------------------IKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE
                               +K S  P  A  +    +PEPS+W+GEKVVSNFFQKTALCMWEDIQDK M+TP+E IPR RPEIATVL  I KIHA+
Subjt:  -----------------------IKNSNPPAKAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAE

Query:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL
         +TSLEEYLNSYL RVDNFNDVQSSY  QLLST+K RQL+EKTSAIKE LTL+ QLR ++
Subjt:  NMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDEKTSAIKEVLTLIDQLREEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTTATCCTCGAAAGGAAGGTCAAGGAGCATAGAGAGGAGAGTGATAGAAGTAGAAGTGATCGCATTGGAAGAGACCTTCGAAGAAAGCAAAGGCATCAGTCACC
TTTGGACGATTATCTTCAAAGACTTGTAGAGATATGTAATGATGACTCTCTAACAAGGCCTCATGTTGTGGATTCAGCCCTTGAAGAAGTTGGTACCTTAAAGACACTAG
TTGCCAAACCAGCTGAACAATCCTTACGTCCTTCTGCTCTTCTCAAGAAGATTCGTCGAGACAAGATGAAAGTGAATGAAAAAGACATCAAAAATTCAAATCCTCCAGCC
AAAGCCCCAAAGCGCCTTAGAGAAGGACATCCTGAGCCTTCTCGGTGGATTGGTGAAAAGGTAGTGTCAAATTTCTTTCAGAAAACGGCCCTATGCATGTGGGAGGACAT
TCAAGACAAGTTTATGCGCACTCCTTATGAATATATCCCAAGATTTAGACCAGAAATAGCAACGGTCCTTTTGAGAATTGCGAAGATCCATGCAGAAAACATGACTTCTC
TTGAAGAATATTTGAATAGCTACCTTAACAGGGTAGACAACTTCAACGATGTACAATCTTCATATTTCACACAGTTGTTGTCGACAAATAAAACCCGTCAATTGGACGAG
AAGACATCTGCCATCAAAGAAGTTTTGACTTTGATTGACCAACTACGAGAAGAGCTACACAGTTATCTTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAGAGTACAAAT
ACTGAGTCTGAACAACTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCTTATCCTCGAAAGGAAGGTCAAGGAGCATAGAGAGGAGAGTGATAGAAGTAGAAGTGATCGCATTGGAAGAGACCTTCGAAGAAAGCAAAGGCATCAGTCACC
TTTGGACGATTATCTTCAAAGACTTGTAGAGATATGTAATGATGACTCTCTAACAAGGCCTCATGTTGTGGATTCAGCCCTTGAAGAAGTTGGTACCTTAAAGACACTAG
TTGCCAAACCAGCTGAACAATCCTTACGTCCTTCTGCTCTTCTCAAGAAGATTCGTCGAGACAAGATGAAAGTGAATGAAAAAGACATCAAAAATTCAAATCCTCCAGCC
AAAGCCCCAAAGCGCCTTAGAGAAGGACATCCTGAGCCTTCTCGGTGGATTGGTGAAAAGGTAGTGTCAAATTTCTTTCAGAAAACGGCCCTATGCATGTGGGAGGACAT
TCAAGACAAGTTTATGCGCACTCCTTATGAATATATCCCAAGATTTAGACCAGAAATAGCAACGGTCCTTTTGAGAATTGCGAAGATCCATGCAGAAAACATGACTTCTC
TTGAAGAATATTTGAATAGCTACCTTAACAGGGTAGACAACTTCAACGATGTACAATCTTCATATTTCACACAGTTGTTGTCGACAAATAAAACCCGTCAATTGGACGAG
AAGACATCTGCCATCAAAGAAGTTTTGACTTTGATTGACCAACTACGAGAAGAGCTACACAGTTATCTTTGGAAAAGAAAGAACTGGAGAGCAGACTTCAGAGTACAAAT
ACTGAGTCTGAACAACTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAG
Protein sequenceShow/hide protein sequence
MTLILERKVKEHREESDRSRSDRIGRDLRRKQRHQSPLDDYLQRLVEICNDDSLTRPHVVDSALEEVGTLKTLVAKPAEQSLRPSALLKKIRRDKMKVNEKDIKNSNPPA
KAPKRLREGHPEPSRWIGEKVVSNFFQKTALCMWEDIQDKFMRTPYEYIPRFRPEIATVLLRIAKIHAENMTSLEEYLNSYLNRVDNFNDVQSSYFTQLLSTNKTRQLDE
KTSAIKEVLTLIDQLREELHSYLWKRKNWRADFRVQILSLNNYPSYLVRKMRP