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PI0023430 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023430
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTHO complex subunit 4D
Genome locationchr06:14844156..14846711
RNA-Seq ExpressionPI0023430
SyntenyPI0023430
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR025715 - Chromatin target of PRMT1 protein, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145851.1 THO complex subunit 4D [Cucumis sativus]3.0e-3294.38Show/hide
Query:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        ESGRNATSNVVN FPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGR    GQGRKKPVEKSSDELDKELENYHAEAMQT
Subjt:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

XP_008457020.1 PREDICTED: THO complex subunit 4D [Cucumis melo]3.3e-3192.22Show/hide
Query:  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        PESGRNAT NVVNPFPGPSHRGGLRNARGRGRGAW+RGVGL GGSGGGRGRGRGRGR    GQGRKKPVEKSSDELDKELENYHAEAMQT
Subjt:  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

XP_022935328.1 THO complex subunit 4D-like [Cucurbita moschata]6.0e-2578.72Show/hide
Query:  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        ESGR  +S+ VNPFPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGRG G GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Subjt:  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

XP_023527122.1 THO complex subunit 4D [Cucurbita pepo subsp. pepo]1.6e-2579.79Show/hide
Query:  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        ESGR  +SN VNPFPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGRG G GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Subjt:  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

XP_038896761.1 THO complex subunit 4D-like [Benincasa hispida]2.4e-2984.44Show/hide
Query:  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        PESGR A+SNVVNPFPGPSHRGGLRN RGRGRG W+RG G+GGG G     GRGRGRGRG+GQGRKKPVEKSSDELDKELENYHAEAMQT
Subjt:  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

TrEMBL top hitse value%identityAlignment
A0A0A0LCJ7 FoP_duplication domain-containing protein1.4e-3294.38Show/hide
Query:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        ESGRNATSNVVN FPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGR    GQGRKKPVEKSSDELDKELENYHAEAMQT
Subjt:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

A0A1S3C452 THO complex subunit 4D1.6e-3192.22Show/hide
Query:  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        PESGRNAT NVVNPFPGPSHRGGLRNARGRGRGAW+RGVGL GGSGGGRGRGRGRGR    GQGRKKPVEKSSDELDKELENYHAEAMQT
Subjt:  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

A0A6J1CP51 THO complex subunit 4D-like3.1e-1973.03Show/hide
Query:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        ESGR  +S VVN FPGPS+RG LR  RGRGRG WSRG G  GG       GRGRGRGRG+G GRKK VEKSSDELDK+LENYHAEAMQT
Subjt:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

A0A6J1FAB9 THO complex subunit 4D-like2.9e-2578.72Show/hide
Query:  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT
        ESGR  +S+ VNPFPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGRG G GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Subjt:  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

A0A6J1J564 THO complex subunit 4D-like2.9e-2573.08Show/hide
Query:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSG---------GGRGRGRGR------GRGRGQGQGRKKPVEKSSDELDKELENYHAE
        ESGR  +SN VNPFPGPSHRGGLR+ RGRGRG WSRG+G GGG G         GGRGRGRGR      G GRG+GQGRKKPVEKSS ELDKELENYHAE
Subjt:  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSG---------GGRGRGRGR------GRGRGQGQGRKKPVEKSSDELDKELENYHAE

Query:  AMQT
        AMQT
Subjt:  AMQT

SwissProt top hitse value%identityAlignment
Q6NQ72 THO complex subunit 4D1.2e-0451.72Show/hide
Query:  GPSHRGGLRNARGRGRGAW-----------SRGVGLGGGSGGGRGRGRGR-GRGRGQGQGR-KKPVEKSSDELDKELENYHAEAMQT
        G   RG +R  RG GRG              +G G+ GG GG R RGRG  GRGRG G+G  KKPVEKS+ +LDK+LE+YHA+AM T
Subjt:  GPSHRGGLRNARGRGRGAW-----------SRGVGLGGGSGGGRGRGRGR-GRGRGQGQGR-KKPVEKSSDELDKELENYHAEAMQT

Q94EH8 THO complex subunit 4C1.4e-0554.12Show/hide
Query:  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDELDKELENYHAEAM
        F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G GRG    G+G KKPVEKS+ +LDK+LE+YHAEAM
Subjt:  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDELDKELENYHAEAM

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-0654.12Show/hide
Query:  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDELDKELENYHAEAM
        F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G GRG    G+G KKPVEKS+ +LDK+LE+YHAEAM
Subjt:  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDELDKELENYHAEAM

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-0654.12Show/hide
Query:  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDELDKELENYHAEAM
        F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G GRG    G+G KKPVEKS+ +LDK+LE+YHAEAM
Subjt:  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDELDKELENYHAEAM

AT5G37720.1 ALWAYS EARLY 48.7e-0651.72Show/hide
Query:  GPSHRGGLRNARGRGRGAW-----------SRGVGLGGGSGGGRGRGRGR-GRGRGQGQGR-KKPVEKSSDELDKELENYHAEAMQT
        G   RG +R  RG GRG              +G G+ GG GG R RGRG  GRGRG G+G  KKPVEKS+ +LDK+LE+YHA+AM T
Subjt:  GPSHRGGLRNARGRGRGAW-----------SRGVGLGGGSGGGRGRGRGR-GRGRGQGQGR-KKPVEKSSDELDKELENYHAEAMQT

AT5G37720.2 ALWAYS EARLY 42.3e-0664.29Show/hide
Query:  RGVGLGGGSGGGRGRGRGR-GRGRGQGQGR-KKPVEKSSDELDKELENYHAEAMQT
        +G G+ GG GG R RGRG  GRGRG G+G  KKPVEKS+ +LDK+LE+YHA+AM T
Subjt:  RGVGLGGGSGGGRGRGRGR-GRGRGQGQGR-KKPVEKSSDELDKELENYHAEAMQT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAACAGAACTTGGGGACGTGGAGAAATCTAGAAAGGAGGTTTTGGAGATGGCCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTCAACCCTTTTCCTGGTCC
AAGTCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTC
GTGGCCGTGGCCGTGGGCAGGGGCAGGGAAGAAAAAAACCTGTGGAGAAGTCCTCAGACGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA
mRNA sequenceShow/hide mRNA sequence
CAATAGTGTAGTTATTTTTGAGTTTTGACCTATAGGATTATAGGATTTTATAATATGATCTCTACCAATCATCATGGGTTGACCTAGTGGTTAAAGTGGAGACATAGTCT
CTATAAATGGCTAAGAGGTCATGGGTTAAATCCCTACCCAGGCATTAATATCCTATGAGTTTATTTGACACCCAAATGTTGTAGTGTGTTTTGTAAGATTAGTCGAGGTG
CTCGTATGTTGACCTGGACACTCATGGATATAAAAAAAATGATAGACACCAATTTTAAAACTCGAAGAGTTTGATGGAGCTGGTTATGCCATTTTAATTTAACCTTTAAT
TAACACTTTAAAGGTATGTAATAAACACATTTTTTCTTCTAAATTGTATTTTTAGTTCCATCGTATGTAAAATCACTACAAAGAAGTTTCATTGTGAGTAATTTCTAATA
CCCACTTCCAATGTAATTTAACTATACTAGACGCACAAATTCTTGCTACTGCCCTAAACTAGCATTTGCTGATTGCAGTTAAGTTACTTCTTAAAATACATTTTCTCAAG
AGTTTTTAGTTCTCAAAATGCATTGGACAGCTTTTCTTGCTTTTAACTTGGAGTGAACTTTCTCTACCTCTTTGTAGCTATTAGATGTAACTATAGCATATCAATTCTCA
TGTCACATTGGAGGAACTTCTTGTTATTACAGTCACATATAGGACTTCTCTTGTAACCTATTTCATCAATGAATGAACAGAACTTGGGGACGTGGAGAAATCTAGAAAGG
AGGTTTTGGAGATGGCCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTCAACCCTTTTCCTGGTCCAAGTCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCG
AGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGCCGTGGGCAGGGGCAGGGAAGAAAAAAACCTG
TGGAGAAGTCCTCAGACGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA
Protein sequenceShow/hide protein sequence
MNEQNLGTWRNLERRFWRWPESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT