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PI0023434 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023434
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:13593255..13593443
RNA-Seq ExpressionPI0023434
SyntenyPI0023434
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025726.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1583.05Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK
        MVD T EA +VEMERKINFLMK IEERDHEI ALKD MKA ETAESSQTP VKA DKGK
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK

KAA0037793.1 uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]5.5e-1579.66Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK
        M D TIEAAMVEM+RKINFLMKA+EERDHEI AL++ M+ RETAESSQTP VKA DKGK
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK

KAA0038969.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1577.42Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL
        M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK  L
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL

TYK11178.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1577.42Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL
        M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK  L
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL

TYK23838.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-1581.36Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK
        MVD T EA M EMERKINFLMK +EERDHEI ALKD MKA ETAESSQTP VKA DKGK
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK

TrEMBL top hitse value%identityAlignment
A0A5A7SIT1 Ty3-gypsy retrotransposon protein1.2e-1583.05Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK
        MVD T EA +VEMERKINFLMK IEERDHEI ALKD MKA ETAESSQTP VKA DKGK
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK

A0A5A7T485 Reverse transcriptase2.7e-1579.66Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK
        M D TIEAAMVEM+RKINFLMKA+EERDHEI AL++ M+ RETAESSQTP VKA DKGK
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK

A0A5A7TCF9 Ty3-gypsy retrotransposon protein1.2e-1577.42Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL
        M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK  L
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL

A0A5D3CJ11 Ty3-gypsy retrotransposon protein1.2e-1577.42Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL
        M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK  L
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL

A0A5D3DK07 Ty3-gypsy retrotransposon protein2.0e-1581.36Show/hide
Query:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK
        MVD T EA M EMERKINFLMK +EERDHEI ALKD MKA ETAESSQTP VKA DKGK
Subjt:  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGATGCAACAATTGAAGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAAATCGTTGCCTTGAAAGATCA
TATGAAGGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTTAAAGCCTATGATAAAGGAAAAGCTACGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGATGCAACAATTGAAGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAAATCGTTGCCTTGAAAGATCA
TATGAAGGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTTAAAGCCTATGATAAAGGAAAAGCTACGTTGTAG
Protein sequenceShow/hide protein sequence
MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL