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PI0023451 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023451
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:13657409..13658011
RNA-Seq ExpressionPI0023451
SyntenyPI0023451
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-4152.11Show/hide
Query:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------
        H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D V +     M + G  MSPDD++ +R  R  E R  SSGSK       
Subjt:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------

Query:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
               R A+EYGN+QL  IAEWP   R+D   T   +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

KAA0046928.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-4152.11Show/hide
Query:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------
        H A KGLLNKSF +YDELSYVFGKDRATG RAE+FAD+ SN P GF  F  D + +   P   + G  MSPDD++ +R  R  E R  SSGSK       
Subjt:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------

Query:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
               R A+EYGN+QL  IAEWP   R+D   T   +V  L+AIP L+ + + R ++ILMRNV DMKAFL++PD  K  YCT+ILQ+N
Subjt:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]7.1e-4251.55Show/hide
Query:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---
        W+  H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D VS+     M + G  MSPDD++ +R  R  E R  SSGSK   
Subjt:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---

Query:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
                   R AMEYGN+QL  IAEWP   R+D   T   +V QL+ IP L+ + + R ++I+MRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-4251.55Show/hide
Query:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---
        W+  H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D V +   P M + G  MSPDD++ +R  R  E R  SSGSK   
Subjt:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---

Query:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
                   R A+EYGN+QL  IAEWP   R+D   T   +V QL+AIP L+ + + R ++I+MRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-4152.11Show/hide
Query:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------
        H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D V +   P M + G  MSPDD++ +R  R  E R  SS SK       
Subjt:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------

Query:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
               R A+EYGN+QL  IAEWP   R+D   T   +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein2.9e-4152.11Show/hide
Query:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------
        H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D V +     M + G  MSPDD++ +R  R  E R  SSGSK       
Subjt:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------

Query:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
               R A+EYGN+QL  IAEWP   R+D   T   +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

A0A5A7TVM3 Retrotransposon protein2.9e-4152.11Show/hide
Query:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------
        H A KGLLNKSF +YDELSYVFGKDRATG RAE+FAD+ SN P GF  F  D + +   P   + G  MSPDD++ +R  R  E R  SSGSK       
Subjt:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------

Query:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
               R A+EYGN+QL  IAEWP   R+D   T   +V  L+AIP L+ + + R ++ILMRNV DMKAFL++PD  K  YCT+ILQ+N
Subjt:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

A0A5A7TYQ6 Retrotransposon protein3.4e-4251.55Show/hide
Query:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---
        W+  H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D VS+     M + G  MSPDD++ +R  R  E R  SSGSK   
Subjt:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---

Query:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
                   R AMEYGN+QL  IAEWP   R+D   T   +V QL+ IP L+ + + R ++I+MRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

A0A5A7U4M2 Retrotransposon protein2.0e-4251.55Show/hide
Query:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---
        W+  H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D V +   P M + G  MSPDD++ +R  R  E R  SSGSK   
Subjt:  WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK---

Query:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
                   R A+EYGN+QL  IAEWP   R+D   T   +V QL+AIP L+ + + R ++I+MRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -----------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

A0A5A7VF53 Retrotransposon protein2.9e-4152.11Show/hide
Query:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------
        H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+  F  D V +   P M + G  MSPDD++ +R  R  E R  SS SK       
Subjt:  HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK-------

Query:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN
               R A+EYGN+QL  IAEWP   R+D   T   +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K  YC++ILQ+N
Subjt:  -------RNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTAATAAAATGGTTGTATTTTCACCTAGCAGAAAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTATCATATGTGTTCGGGAAAGACCGCGCTAC
TGGACAACGCGCGGAGATGTTCGCAGATGTCAGTTCTAATGTGCCCGGTGGTTTCGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGGCATCCCATGCATGTGCAACC
AGGGACATCCCATGTCACCAGATGACGTAGTGGGCTCACGTCCGGAACGGTCGGGTGAGGGTAGGGCGAGTTCGAGCGGTTCGAAAAGGAACGCCATGGAATATGGGAAT
GACCAGCTTAAGGCTATTGCAGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCATGTAGCAGTCGTTACGCAATTGCAGGCCATCCCTAGACTATCAAGAAT
CGCCAAGGCGCGCTGTATACAGATACTCATGCGAAACGTGGTCGATATGAAAGCGTTTTTGCAAATACCTGACGACTTTAAGATCAACTACTGCACGGTCATTCTCCAAG
ACAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTAATAAAATGGTTGTATTTTCACCTAGCAGAAAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTATCATATGTGTTCGGGAAAGACCGCGCTAC
TGGACAACGCGCGGAGATGTTCGCAGATGTCAGTTCTAATGTGCCCGGTGGTTTCGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGGCATCCCATGCATGTGCAACC
AGGGACATCCCATGTCACCAGATGACGTAGTGGGCTCACGTCCGGAACGGTCGGGTGAGGGTAGGGCGAGTTCGAGCGGTTCGAAAAGGAACGCCATGGAATATGGGAAT
GACCAGCTTAAGGCTATTGCAGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCATGTAGCAGTCGTTACGCAATTGCAGGCCATCCCTAGACTATCAAGAAT
CGCCAAGGCGCGCTGTATACAGATACTCATGCGAAACGTGGTCGATATGAAAGCGTTTTTGCAAATACCTGACGACTTTAAGATCAACTACTGCACGGTCATTCTCCAAG
ACAATGCTTGA
Protein sequenceShow/hide protein sequence
MNLIKWLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSKRNAMEYGN
DQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDNA