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PI0023493 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023493
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:17068379..17068998
RNA-Seq ExpressionPI0023493
SyntenyPI0023493
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.1e-6377.92Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N +RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKL AQPD+ANVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.8e-6277.27Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMT LLTSFVQG  +KV KCGVC L+GH NDKCP+++E+ N +RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT 
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKL AQPDHANVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-6377.27Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N +RKYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKLSAQ ++ANVSA+SLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.0e-6377.27Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQ   +KV KCGVCGL+GHPNDKCP+++E+ N +R+YDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKL AQ DHANVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.0e-6276.62Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N +R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ +MKQQM+QLT  ISK++GKGKL AQPDH NVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032915.1e-6376.62Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N +R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ +MKQQM+QLT  ISK++GKGKL AQPDH NVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

A0A5A7UID2 Retrotransposon gag protein3.9e-6377.27Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQ   +KV KCGVCGL+GHPNDKCP+++E+ N +R+YDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKL AQ DHANVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

A0A5D3CFE7 Retrotransposon gag protein3.3e-6276.62Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N +R+YDPHGNTYN GWRD PNLRWGN+ Q  TQA  TS+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKL AQPDHANVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

A0A5D3CRR8 Retrotransposon gag protein2.3e-6377.27Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N +RKYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKLSAQ ++ANVSA+SLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

E5GBZ4 Retrotransposon gag protein1.0e-6377.92Show/hide
Query:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N +RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK
        SFQ EMKQQM+QLT AISK++GKGKL AQPD+ANVSAISLRSGKIL TP ++EK
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGA
CCTAGTGGAAGAGGCAAATGCCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGATAATCCAAACCTTAGATGGGGAAACAATAATCAACAAC
CCACGCAAGCAACTCCTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATG
TCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGTCAGCTCAGCCTGACCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCA
AACCCCTCCAAGTGAAGAAAAGATTAATTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGA
CCTAGTGGAAGAGGCAAATGCCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGATAATCCAAACCTTAGATGGGGAAACAATAATCAACAAC
CCACGCAAGCAACTCCTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATG
TCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGTCAGCTCAGCCTGACCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCA
AACCCCTCCAAGTGAAGAAAAGATTAATTCCTAA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQM
SQLTNAISKLEGKGKLSAQPDHANVSAISLRSGKILQTPPSEEKINS